miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 3' -53.5 NC_001875.2 + 56907 1.11 0.003143
Target:  5'- uCGGGCCGGCACUUGAGCACGUUUAUCg -3'
miRNA:   3'- -GCCCGGCCGUGAACUCGUGCAAAUAG- -5'
6815 3' -53.5 NC_001875.2 + 94671 0.67 0.931026
Target:  5'- uGGGCCaGCGCgc-GGCACGggUGc- -3'
miRNA:   3'- gCCCGGcCGUGaacUCGUGCaaAUag -5'
6815 3' -53.5 NC_001875.2 + 90680 0.66 0.950179
Target:  5'- gGGGCUGcGCACagucaacgaGGGCACGUUa--- -3'
miRNA:   3'- gCCCGGC-CGUGaa-------CUCGUGCAAauag -5'
6815 3' -53.5 NC_001875.2 + 90036 0.66 0.955944
Target:  5'- gCGGcGCCGGCGCgcgUGccggcggaaaucacaAGCAUGggcGUCa -3'
miRNA:   3'- -GCC-CGGCCGUGa--AC---------------UCGUGCaaaUAG- -5'
6815 3' -53.5 NC_001875.2 + 60920 0.7 0.778247
Target:  5'- gGGGCCGGCGCU-GAcGCACc------ -3'
miRNA:   3'- gCCCGGCCGUGAaCU-CGUGcaaauag -5'
6815 3' -53.5 NC_001875.2 + 33274 0.7 0.805421
Target:  5'- aGGGaCGGCGgcagcagcgcguuCUUGAGCACGg-UGUCg -3'
miRNA:   3'- gCCCgGCCGU-------------GAACUCGUGCaaAUAG- -5'
6815 3' -53.5 NC_001875.2 + 50484 0.7 0.815373
Target:  5'- aCGcGGCCGGCGCgUGcGCGCGg----- -3'
miRNA:   3'- -GC-CCGGCCGUGaACuCGUGCaaauag -5'
6815 3' -53.5 NC_001875.2 + 26177 0.69 0.832911
Target:  5'- gGuGGCCGGCAag-GAGCugGUg---- -3'
miRNA:   3'- gC-CCGGCCGUgaaCUCGugCAaauag -5'
6815 3' -53.5 NC_001875.2 + 131751 0.68 0.880621
Target:  5'- uGGGCCGGCGgCggaucggGcGGCGCGUcauuggUGUCg -3'
miRNA:   3'- gCCCGGCCGU-Gaa-----C-UCGUGCAa-----AUAG- -5'
6815 3' -53.5 NC_001875.2 + 93858 0.67 0.931026
Target:  5'- aCGGuuGUCGGCGC-UGAGCGCGc----- -3'
miRNA:   3'- -GCC--CGGCCGUGaACUCGUGCaaauag -5'
6815 3' -53.5 NC_001875.2 + 113955 0.67 0.90782
Target:  5'- -cGGCCGGCACcUGGGUguaaaaguuucGCGUguccGUCa -3'
miRNA:   3'- gcCCGGCCGUGaACUCG-----------UGCAaa--UAG- -5'
6815 3' -53.5 NC_001875.2 + 115936 0.68 0.873222
Target:  5'- cCGGuGCCGGCAaaguAGCGCGg--GUCu -3'
miRNA:   3'- -GCC-CGGCCGUgaacUCGUGCaaaUAG- -5'
6815 3' -53.5 NC_001875.2 + 118941 0.75 0.514429
Target:  5'- aCGGGCCGGCGCUagggugucgcaagcuUGuGUACGcUUAUUu -3'
miRNA:   3'- -GCCCGGCCGUGA---------------ACuCGUGCaAAUAG- -5'
6815 3' -53.5 NC_001875.2 + 32919 0.67 0.914001
Target:  5'- aGGuGUCGaGCACUuggUGAGCGCGUcaGUUu -3'
miRNA:   3'- gCC-CGGC-CGUGA---ACUCGUGCAaaUAG- -5'
6815 3' -53.5 NC_001875.2 + 131519 0.71 0.716536
Target:  5'- gGGGCCGGCAUccguuugagcgGAGCGCGg----- -3'
miRNA:   3'- gCCCGGCCGUGaa---------CUCGUGCaaauag -5'
6815 3' -53.5 NC_001875.2 + 60983 0.68 0.865594
Target:  5'- gCGGGUCGGCGCU--GGCGCa------ -3'
miRNA:   3'- -GCCCGGCCGUGAacUCGUGcaaauag -5'
6815 3' -53.5 NC_001875.2 + 83019 0.67 0.925605
Target:  5'- gCGGcGCCGuaGCGCgcgGAGCAUGUUa--- -3'
miRNA:   3'- -GCC-CGGC--CGUGaa-CUCGUGCAAauag -5'
6815 3' -53.5 NC_001875.2 + 120830 0.66 0.945767
Target:  5'- uGGGCaGGCACaccaUGGGCACGc----- -3'
miRNA:   3'- gCCCGgCCGUGa---ACUCGUGCaaauag -5'
6815 3' -53.5 NC_001875.2 + 99921 0.71 0.748908
Target:  5'- gCGGGCCGcGCGCgcggUGcAGCGCGg----- -3'
miRNA:   3'- -GCCCGGC-CGUGa---AC-UCGUGCaaauag -5'
6815 3' -53.5 NC_001875.2 + 55840 0.7 0.806334
Target:  5'- aCGGGCCagauuGGCggacacGCUUGAGCACGc----- -3'
miRNA:   3'- -GCCCGG-----CCG------UGAACUCGUGCaaauag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.