miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 56815 0.66 0.956227
Target:  5'- -----cGCGUACUCGUuCACgGCCg- -3'
miRNA:   3'- cauuauCGCGUGAGCAuGUGgCGGgg -5'
6815 5' -53 NC_001875.2 + 121389 0.66 0.956227
Target:  5'- ----gAGCGCGC-CGccGCGCCGCgUCa -3'
miRNA:   3'- cauuaUCGCGUGaGCa-UGUGGCGgGG- -5'
6815 5' -53 NC_001875.2 + 62833 0.66 0.956227
Target:  5'- ----cAGCGCGCcaccaCGUGC-UUGCCCCc -3'
miRNA:   3'- cauuaUCGCGUGa----GCAUGuGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 66635 0.66 0.960031
Target:  5'- uGUGcaAGCGCauGCUgGaGCugCGCUCCg -3'
miRNA:   3'- -CAUuaUCGCG--UGAgCaUGugGCGGGG- -5'
6815 5' -53 NC_001875.2 + 4888 0.66 0.952185
Target:  5'- -----cGUGCGCUCGUGuCGCCGgcaUCCUg -3'
miRNA:   3'- cauuauCGCGUGAGCAU-GUGGC---GGGG- -5'
6815 5' -53 NC_001875.2 + 116038 0.66 0.952185
Target:  5'- uUGGUGGUGCA---GUAC-CCGCCCa -3'
miRNA:   3'- cAUUAUCGCGUgagCAUGuGGCGGGg -5'
6815 5' -53 NC_001875.2 + 82963 0.66 0.970058
Target:  5'- ----gGGCGCGucCUCG-GCgACCGaCCCCu -3'
miRNA:   3'- cauuaUCGCGU--GAGCaUG-UGGC-GGGG- -5'
6815 5' -53 NC_001875.2 + 67887 0.66 0.9636
Target:  5'- ----cAGCGCGgUCGgcgACAgCGCCUUc -3'
miRNA:   3'- cauuaUCGCGUgAGCa--UGUgGCGGGG- -5'
6815 5' -53 NC_001875.2 + 110170 0.66 0.9636
Target:  5'- -gAGU-GCGCGCUUGgcCuCCGCCUUg -3'
miRNA:   3'- caUUAuCGCGUGAGCauGuGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 34683 0.66 0.970058
Target:  5'- ----gGGCuGCGCgUCaaGgGCCGCCCCa -3'
miRNA:   3'- cauuaUCG-CGUG-AGcaUgUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 60107 0.66 0.952185
Target:  5'- cGUAGacGUGuCGCUCGUuuACGCUGCCgCa -3'
miRNA:   3'- -CAUUauCGC-GUGAGCA--UGUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 49111 0.66 0.960031
Target:  5'- -----cGUGCGCguaaaGCGCUGCCCCg -3'
miRNA:   3'- cauuauCGCGUGagca-UGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 125141 0.66 0.956227
Target:  5'- gGgcAUGGUGUACaaauggCGUGCGCCGUCg- -3'
miRNA:   3'- -CauUAUCGCGUGa-----GCAUGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 5512 0.66 0.956227
Target:  5'- ----cGGCGCACgcgCGcaguuUACGCCgGCCgCCg -3'
miRNA:   3'- cauuaUCGCGUGa--GC-----AUGUGG-CGG-GG- -5'
6815 5' -53 NC_001875.2 + 66115 0.66 0.956227
Target:  5'- ----cGGCGgGCggCGaggcgGCGCCGCCCg -3'
miRNA:   3'- cauuaUCGCgUGa-GCa----UGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 33671 0.66 0.955834
Target:  5'- ----cGGCGUgguaaaacaaacgGCccgaCGUGCGCCGCCCg -3'
miRNA:   3'- cauuaUCGCG-------------UGa---GCAUGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 10881 0.66 0.952185
Target:  5'- uGUAAUAGUGCAa--GUACGCgUGCUCa -3'
miRNA:   3'- -CAUUAUCGCGUgagCAUGUG-GCGGGg -5'
6815 5' -53 NC_001875.2 + 111190 0.66 0.960031
Target:  5'- ----gGGCGCGCUgGgcgGCGCgCGCCg- -3'
miRNA:   3'- cauuaUCGCGUGAgCa--UGUG-GCGGgg -5'
6815 5' -53 NC_001875.2 + 11168 0.66 0.9636
Target:  5'- -cGAUGGCGCACagcaGcGCGCCGUCg- -3'
miRNA:   3'- caUUAUCGCGUGag--CaUGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 105470 0.66 0.970058
Target:  5'- -----uGCGCACUguuuugcggccgCGUACAUgGCCaCCu -3'
miRNA:   3'- cauuauCGCGUGA------------GCAUGUGgCGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.