miRNA display CGI


Results 1 - 20 of 173 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 100910 0.66 0.960031
Target:  5'- ----cAGCGCGCggagacgCGU-CGCCGCgCUCg -3'
miRNA:   3'- cauuaUCGCGUGa------GCAuGUGGCG-GGG- -5'
6815 5' -53 NC_001875.2 + 30959 0.66 0.952185
Target:  5'- --cAUGGCGCccACgcgCGcGCugCGCCUCg -3'
miRNA:   3'- cauUAUCGCG--UGa--GCaUGugGCGGGG- -5'
6815 5' -53 NC_001875.2 + 88237 0.66 0.952185
Target:  5'- ----cGGCGCAagcggCGcGCGCCGCCgCu -3'
miRNA:   3'- cauuaUCGCGUga---GCaUGUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 128843 0.66 0.956227
Target:  5'- -----cGCGCACUUcaAC-CCGCCCg -3'
miRNA:   3'- cauuauCGCGUGAGcaUGuGGCGGGg -5'
6815 5' -53 NC_001875.2 + 80131 0.66 0.956227
Target:  5'- -gGGUcGuCGCACUCGUGCGCguCGCUgCu -3'
miRNA:   3'- caUUAuC-GCGUGAGCAUGUG--GCGGgG- -5'
6815 5' -53 NC_001875.2 + 5136 0.66 0.970058
Target:  5'- ------cCGCGgaCGUGCGCCGCUUCg -3'
miRNA:   3'- cauuaucGCGUgaGCAUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 66919 0.66 0.956227
Target:  5'- -aAAUGGCGCACaaugUCGU-CGUCGCUCUg -3'
miRNA:   3'- caUUAUCGCGUG----AGCAuGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 89482 0.66 0.956227
Target:  5'- -aAGUGGCGCcCUC--GCGCCGCaaCCg -3'
miRNA:   3'- caUUAUCGCGuGAGcaUGUGGCGg-GG- -5'
6815 5' -53 NC_001875.2 + 67799 0.66 0.958914
Target:  5'- aGUAAUAGCucGCugUCGUauuuaaucuuguucACGCuCGUCCa -3'
miRNA:   3'- -CAUUAUCG--CGugAGCA--------------UGUG-GCGGGg -5'
6815 5' -53 NC_001875.2 + 41916 0.66 0.956227
Target:  5'- -aAGUGGCcCGCggacGCGCCGCCCUu -3'
miRNA:   3'- caUUAUCGcGUGagcaUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 111953 0.66 0.969756
Target:  5'- cUAAaAGCGCACgCGUuucgcaaACGgCGCCCg -3'
miRNA:   3'- cAUUaUCGCGUGaGCA-------UGUgGCGGGg -5'
6815 5' -53 NC_001875.2 + 67887 0.66 0.9636
Target:  5'- ----cAGCGCGgUCGgcgACAgCGCCUUc -3'
miRNA:   3'- cauuaUCGCGUgAGCa--UGUgGCGGGG- -5'
6815 5' -53 NC_001875.2 + 33224 0.66 0.952185
Target:  5'- ----gGGCGCggGCUCGccggGCGCCGUUUCg -3'
miRNA:   3'- cauuaUCGCG--UGAGCa---UGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 51972 0.66 0.966616
Target:  5'- -----cGCGCGCgCGUggaccacGCGCCaCCCCa -3'
miRNA:   3'- cauuauCGCGUGaGCA-------UGUGGcGGGG- -5'
6815 5' -53 NC_001875.2 + 13403 0.66 0.960031
Target:  5'- ----aGGCGCGCUugcacgggccCGUuaaaACAaaaCGCCCCg -3'
miRNA:   3'- cauuaUCGCGUGA----------GCA----UGUg--GCGGGG- -5'
6815 5' -53 NC_001875.2 + 105470 0.66 0.970058
Target:  5'- -----uGCGCACUguuuugcggccgCGUACAUgGCCaCCu -3'
miRNA:   3'- cauuauCGCGUGA------------GCAUGUGgCGG-GG- -5'
6815 5' -53 NC_001875.2 + 54546 0.66 0.956227
Target:  5'- ----cGGCGUACUgcugaaacaUGUACugCGCCgCg -3'
miRNA:   3'- cauuaUCGCGUGA---------GCAUGugGCGGgG- -5'
6815 5' -53 NC_001875.2 + 34683 0.66 0.970058
Target:  5'- ----gGGCuGCGCgUCaaGgGCCGCCCCa -3'
miRNA:   3'- cauuaUCG-CGUG-AGcaUgUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 70726 0.66 0.970058
Target:  5'- ---uUGGC-CACgCGUcaACGCCaGCCCCu -3'
miRNA:   3'- cauuAUCGcGUGaGCA--UGUGG-CGGGG- -5'
6815 5' -53 NC_001875.2 + 124756 0.66 0.956227
Target:  5'- -----cGCGCACguaGUAgcUGCCGCCCg -3'
miRNA:   3'- cauuauCGCGUGag-CAU--GUGGCGGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.