miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 311 0.71 0.783272
Target:  5'- ----gGGCGCGCUU-UGCGCCGCUUCc -3'
miRNA:   3'- cauuaUCGCGUGAGcAUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 1720 0.67 0.938586
Target:  5'- cUGcgGGCGCGacacCGgucGCGCCGCCgCCg -3'
miRNA:   3'- cAUuaUCGCGUga--GCa--UGUGGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 2904 0.73 0.661898
Target:  5'- ---uUAGC-CGCUCGUGCcuauucACCGCCUCg -3'
miRNA:   3'- cauuAUCGcGUGAGCAUG------UGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 4888 0.66 0.952185
Target:  5'- -----cGUGCGCUCGUGuCGCCGgcaUCCUg -3'
miRNA:   3'- cauuauCGCGUGAGCAU-GUGGC---GGGG- -5'
6815 5' -53 NC_001875.2 + 4940 0.67 0.933552
Target:  5'- ----gGGCaGCACUaacacuuUGCGCCGCCUCg -3'
miRNA:   3'- cauuaUCG-CGUGAgc-----AUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 5013 0.71 0.764017
Target:  5'- -----uGUGCACUU-UGCGCCGCCUCg -3'
miRNA:   3'- cauuauCGCGUGAGcAUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 5136 0.66 0.970058
Target:  5'- ------cCGCGgaCGUGCGCCGCUUCg -3'
miRNA:   3'- cauuaucGCGUgaGCAUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 5512 0.66 0.956227
Target:  5'- ----cGGCGCACgcgCGcaguuUACGCCgGCCgCCg -3'
miRNA:   3'- cauuaUCGCGUGa--GC-----AUGUGG-CGG-GG- -5'
6815 5' -53 NC_001875.2 + 5931 0.66 0.96694
Target:  5'- -gGGUAGCGCcgcGCagGUggGCGCgGCCUCg -3'
miRNA:   3'- caUUAUCGCG---UGagCA--UGUGgCGGGG- -5'
6815 5' -53 NC_001875.2 + 6452 0.73 0.660848
Target:  5'- cGUAGUAGCGCGCgguguucgucaggUCGauUACGgCGCCCa -3'
miRNA:   3'- -CAUUAUCGCGUG-------------AGC--AUGUgGCGGGg -5'
6815 5' -53 NC_001875.2 + 6697 0.76 0.486466
Target:  5'- ----cGGCGCACgccauUUGUACACCauGCCCCg -3'
miRNA:   3'- cauuaUCGCGUG-----AGCAUGUGG--CGGGG- -5'
6815 5' -53 NC_001875.2 + 7948 0.69 0.884234
Target:  5'- ---uUAGC-CGCUCGUcguugACACCGCCa- -3'
miRNA:   3'- cauuAUCGcGUGAGCA-----UGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 9711 0.7 0.811054
Target:  5'- -----uGCGCGC-CGgccGCGCCGCgCCCg -3'
miRNA:   3'- cauuauCGCGUGaGCa--UGUGGCG-GGG- -5'
6815 5' -53 NC_001875.2 + 10410 0.78 0.402512
Target:  5'- gGUAAaGGCGCGC-CGUGCAucCCGaCCCCa -3'
miRNA:   3'- -CAUUaUCGCGUGaGCAUGU--GGC-GGGG- -5'
6815 5' -53 NC_001875.2 + 10881 0.66 0.952185
Target:  5'- uGUAAUAGUGCAa--GUACGCgUGCUCa -3'
miRNA:   3'- -CAUUAUCGCGUgagCAUGUG-GCGGGg -5'
6815 5' -53 NC_001875.2 + 11078 0.68 0.922727
Target:  5'- uGgcGUGGCGCGCgcccuggacaCGgcCGCCGUCUCg -3'
miRNA:   3'- -CauUAUCGCGUGa---------GCauGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 11168 0.66 0.9636
Target:  5'- -cGAUGGCGCACagcaGcGCGCCGUCg- -3'
miRNA:   3'- caUUAUCGCGUGag--CaUGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 11184 0.67 0.943367
Target:  5'- -aAGUuGCGCGC-CGUuguggagcacgACGCCGCgCCg -3'
miRNA:   3'- caUUAuCGCGUGaGCA-----------UGUGGCGgGG- -5'
6815 5' -53 NC_001875.2 + 12175 0.69 0.876968
Target:  5'- ----aAGC-CGCU-GUGCGCCGCCgCCg -3'
miRNA:   3'- cauuaUCGcGUGAgCAUGUGGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 13403 0.66 0.960031
Target:  5'- ----aGGCGCGCUugcacgggccCGUuaaaACAaaaCGCCCCg -3'
miRNA:   3'- cauuaUCGCGUGA----------GCA----UGUg--GCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.