miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 18163 0.7 0.811054
Target:  5'- ----cGGCGCGCgCG-ACGCCGCCaCUg -3'
miRNA:   3'- cauuaUCGCGUGaGCaUGUGGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 29418 0.73 0.672384
Target:  5'- ----cAGCGCAcCUCGU-CGCCGCggCCCa -3'
miRNA:   3'- cauuaUCGCGU-GAGCAuGUGGCG--GGG- -5'
6815 5' -53 NC_001875.2 + 54305 0.73 0.682835
Target:  5'- -aAGUAGCuGgGCUCGUGCACgGCCg- -3'
miRNA:   3'- caUUAUCG-CgUGAGCAUGUGgCGGgg -5'
6815 5' -53 NC_001875.2 + 92500 0.73 0.682835
Target:  5'- cGUGAUgGGCGCaaaacgggcGCUCGUGCG-CGCCCg -3'
miRNA:   3'- -CAUUA-UCGCG---------UGAGCAUGUgGCGGGg -5'
6815 5' -53 NC_001875.2 + 89296 0.73 0.682835
Target:  5'- uGUAGUGGcCGCAUg---GCGCCGCCaCCa -3'
miRNA:   3'- -CAUUAUC-GCGUGagcaUGUGGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 110821 0.73 0.693241
Target:  5'- -aGGUGGaCGCGCUgGUGCGCCGCg-- -3'
miRNA:   3'- caUUAUC-GCGUGAgCAUGUGGCGggg -5'
6815 5' -53 NC_001875.2 + 90967 0.71 0.76304
Target:  5'- -----cGCGCACgcgauuuUCGUGCGCCGUuugCCCa -3'
miRNA:   3'- cauuauCGCGUG-------AGCAUGUGGCG---GGG- -5'
6815 5' -53 NC_001875.2 + 68852 0.71 0.801953
Target:  5'- ----gGGuCGCACgCGUGCGCgagUGCCCCg -3'
miRNA:   3'- cauuaUC-GCGUGaGCAUGUG---GCGGGG- -5'
6815 5' -53 NC_001875.2 + 48019 0.7 0.811054
Target:  5'- cGUGGUGGCGgccCACgUGgcCGCCGCCCa -3'
miRNA:   3'- -CAUUAUCGC---GUGaGCauGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 97744 0.73 0.672384
Target:  5'- -----cGCGCGCUCGUGCAa--CCCCg -3'
miRNA:   3'- cauuauCGCGUGAGCAUGUggcGGGG- -5'
6815 5' -53 NC_001875.2 + 37361 0.73 0.661898
Target:  5'- -----cGCGCGCUCGUgcgaacgcgcGCGCCGCUgCa -3'
miRNA:   3'- cauuauCGCGUGAGCA----------UGUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 54923 0.73 0.661898
Target:  5'- ----gAGcCGCuCUCGUcgucgcuggGCGCCGCCCCu -3'
miRNA:   3'- cauuaUC-GCGuGAGCA---------UGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 68151 0.76 0.486466
Target:  5'- -----cGCGCAcCUCGUGCG-CGCCCCu -3'
miRNA:   3'- cauuauCGCGU-GAGCAUGUgGCGGGG- -5'
6815 5' -53 NC_001875.2 + 88265 0.75 0.567437
Target:  5'- -----cGcCGUACUCGUcagacgaagaagACGCCGCCCCg -3'
miRNA:   3'- cauuauC-GCGUGAGCA------------UGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 48516 0.75 0.577841
Target:  5'- ---uUGGCGCGC-CGcccgGCGCgCGCCCCg -3'
miRNA:   3'- cauuAUCGCGUGaGCa---UGUG-GCGGGG- -5'
6815 5' -53 NC_001875.2 + 54744 0.75 0.577841
Target:  5'- cGUGcgGGCGCAC-CGccgGCACCGCCa- -3'
miRNA:   3'- -CAUuaUCGCGUGaGCa--UGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 116192 0.75 0.588286
Target:  5'- --uGUGGCGUGCgUC-UGCACCGCCUCa -3'
miRNA:   3'- cauUAUCGCGUG-AGcAUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 55333 0.74 0.598765
Target:  5'- gGUGAUGaCGCGCcgcuUCGgggGCGCCGCCUCg -3'
miRNA:   3'- -CAUUAUcGCGUG----AGCa--UGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 92761 0.74 0.60927
Target:  5'- ---uUGGCGUAUUCGUaaACGCCGCCa- -3'
miRNA:   3'- cauuAUCGCGUGAGCA--UGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 6452 0.73 0.660848
Target:  5'- cGUAGUAGCGCGCgguguucgucaggUCGauUACGgCGCCCa -3'
miRNA:   3'- -CAUUAUCGCGUG-------------AGC--AUGUgGCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.