Results 1 - 20 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6815 | 5' | -53 | NC_001875.2 | + | 56942 | 1.13 | 0.0025 |
Target: 5'- cGUAAUAGCGCACUCGUACACCGCCCCg -3' miRNA: 3'- -CAUUAUCGCGUGAGCAUGUGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 10410 | 0.78 | 0.402512 |
Target: 5'- gGUAAaGGCGCGC-CGUGCAucCCGaCCCCa -3' miRNA: 3'- -CAUUaUCGCGUGaGCAUGU--GGC-GGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 18274 | 0.77 | 0.438717 |
Target: 5'- -cAAUGGCGCGC-CGUGCgcgACCGCgCCg -3' miRNA: 3'- caUUAUCGCGUGaGCAUG---UGGCGgGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 6697 | 0.76 | 0.486466 |
Target: 5'- ----cGGCGCACgccauUUGUACACCauGCCCCg -3' miRNA: 3'- cauuaUCGCGUG-----AGCAUGUGG--CGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 68151 | 0.76 | 0.486466 |
Target: 5'- -----cGCGCAcCUCGUGCG-CGCCCCu -3' miRNA: 3'- cauuauCGCGU-GAGCAUGUgGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 124375 | 0.76 | 0.505251 |
Target: 5'- -cAAUGGCGCagaaucgGC-CGUACACCGCCgCa -3' miRNA: 3'- caUUAUCGCG-------UGaGCAUGUGGCGGgG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 48818 | 0.76 | 0.516269 |
Target: 5'- --cGUGGCGCACUCGcUGCGCgCGgUCCa -3' miRNA: 3'- cauUAUCGCGUGAGC-AUGUG-GCgGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 71602 | 0.76 | 0.526368 |
Target: 5'- ---cUAGCGCGCUCGUGC-UCGCCa- -3' miRNA: 3'- cauuAUCGCGUGAGCAUGuGGCGGgg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 92786 | 0.75 | 0.567437 |
Target: 5'- -cAAUGGCcauGCGCUUgcgGUACAgCGCCCCg -3' miRNA: 3'- caUUAUCG---CGUGAG---CAUGUgGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 88265 | 0.75 | 0.567437 |
Target: 5'- -----cGcCGUACUCGUcagacgaagaagACGCCGCCCCg -3' miRNA: 3'- cauuauC-GCGUGAGCA------------UGUGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 63896 | 0.75 | 0.577841 |
Target: 5'- aGUAAgaAGCGCGC-CGUgGCGCCGCCgCa -3' miRNA: 3'- -CAUUa-UCGCGUGaGCA-UGUGGCGGgG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 54744 | 0.75 | 0.577841 |
Target: 5'- cGUGcgGGCGCAC-CGccgGCACCGCCa- -3' miRNA: 3'- -CAUuaUCGCGUGaGCa--UGUGGCGGgg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 48516 | 0.75 | 0.577841 |
Target: 5'- ---uUGGCGCGC-CGcccgGCGCgCGCCCCg -3' miRNA: 3'- cauuAUCGCGUGaGCa---UGUG-GCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 116192 | 0.75 | 0.588286 |
Target: 5'- --uGUGGCGUGCgUC-UGCACCGCCUCa -3' miRNA: 3'- cauUAUCGCGUG-AGcAUGUGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 55333 | 0.74 | 0.598765 |
Target: 5'- gGUGAUGaCGCGCcgcuUCGgggGCGCCGCCUCg -3' miRNA: 3'- -CAUUAUcGCGUG----AGCa--UGUGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 92761 | 0.74 | 0.60927 |
Target: 5'- ---uUGGCGUAUUCGUaaACGCCGCCa- -3' miRNA: 3'- cauuAUCGCGUGAGCA--UGUGGCGGgg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 62977 | 0.74 | 0.630326 |
Target: 5'- uGUAGUugucGGgGCACUCGcGCACCGCgugcgaCCCg -3' miRNA: 3'- -CAUUA----UCgCGUGAGCaUGUGGCG------GGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 6452 | 0.73 | 0.660848 |
Target: 5'- cGUAGUAGCGCGCgguguucgucaggUCGauUACGgCGCCCa -3' miRNA: 3'- -CAUUAUCGCGUG-------------AGC--AUGUgGCGGGg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 37361 | 0.73 | 0.661898 |
Target: 5'- -----cGCGCGCUCGUgcgaacgcgcGCGCCGCUgCa -3' miRNA: 3'- cauuauCGCGUGAGCA----------UGUGGCGGgG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 54923 | 0.73 | 0.661898 |
Target: 5'- ----gAGcCGCuCUCGUcgucgcuggGCGCCGCCCCu -3' miRNA: 3'- cauuaUC-GCGuGAGCA---------UGUGGCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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