miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 37361 0.73 0.661898
Target:  5'- -----cGCGCGCUCGUgcgaacgcgcGCGCCGCUgCa -3'
miRNA:   3'- cauuauCGCGUGAGCA----------UGUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 120684 0.73 0.661898
Target:  5'- -cGAUGcGCGCGCg-GUACGCCuCCCCg -3'
miRNA:   3'- caUUAU-CGCGUGagCAUGUGGcGGGG- -5'
6815 5' -53 NC_001875.2 + 2904 0.73 0.661898
Target:  5'- ---uUAGC-CGCUCGUGCcuauucACCGCCUCg -3'
miRNA:   3'- cauuAUCGcGUGAGCAUG------UGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 29418 0.73 0.672384
Target:  5'- ----cAGCGCAcCUCGU-CGCCGCggCCCa -3'
miRNA:   3'- cauuaUCGCGU-GAGCAuGUGGCG--GGG- -5'
6815 5' -53 NC_001875.2 + 97744 0.73 0.672384
Target:  5'- -----cGCGCGCUCGUGCAa--CCCCg -3'
miRNA:   3'- cauuauCGCGUGAGCAUGUggcGGGG- -5'
6815 5' -53 NC_001875.2 + 13475 0.73 0.682835
Target:  5'- ----aGGuCGCACUCGUACagcggGCCGCCgCu -3'
miRNA:   3'- cauuaUC-GCGUGAGCAUG-----UGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 92500 0.73 0.682835
Target:  5'- cGUGAUgGGCGCaaaacgggcGCUCGUGCG-CGCCCg -3'
miRNA:   3'- -CAUUA-UCGCG---------UGAGCAUGUgGCGGGg -5'
6815 5' -53 NC_001875.2 + 89296 0.73 0.682835
Target:  5'- uGUAGUGGcCGCAUg---GCGCCGCCaCCa -3'
miRNA:   3'- -CAUUAUC-GCGUGagcaUGUGGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 54305 0.73 0.682835
Target:  5'- -aAGUAGCuGgGCUCGUGCACgGCCg- -3'
miRNA:   3'- caUUAUCG-CgUGAGCAUGUGgCGGgg -5'
6815 5' -53 NC_001875.2 + 110821 0.73 0.693241
Target:  5'- -aGGUGGaCGCGCUgGUGCGCCGCg-- -3'
miRNA:   3'- caUUAUC-GCGUGAgCAUGUGGCGggg -5'
6815 5' -53 NC_001875.2 + 18532 0.73 0.703594
Target:  5'- -gAGUA-CGCGCUCGUguuugGCAUCGCCaCCg -3'
miRNA:   3'- caUUAUcGCGUGAGCA-----UGUGGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 92555 0.72 0.713882
Target:  5'- -----cGCGCACUUGgugucgGCgggcagaaGCCGCCCCg -3'
miRNA:   3'- cauuauCGCGUGAGCa-----UG--------UGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 18453 0.72 0.744265
Target:  5'- --cGUGGCGCGCgaaUCGcGCGCCGCUgaCCg -3'
miRNA:   3'- cauUAUCGCGUG---AGCaUGUGGCGG--GG- -5'
6815 5' -53 NC_001875.2 + 77494 0.71 0.762062
Target:  5'- gGUAccAGCGCGCgcauuccuucaaCGUGCACUuuuGCCCCa -3'
miRNA:   3'- -CAUuaUCGCGUGa-----------GCAUGUGG---CGGGG- -5'
6815 5' -53 NC_001875.2 + 90967 0.71 0.76304
Target:  5'- -----cGCGCACgcgauuuUCGUGCGCCGUuugCCCa -3'
miRNA:   3'- cauuauCGCGUG-------AGCAUGUGGCG---GGG- -5'
6815 5' -53 NC_001875.2 + 5013 0.71 0.764017
Target:  5'- -----uGUGCACUU-UGCGCCGCCUCg -3'
miRNA:   3'- cauuauCGCGUGAGcAUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 21670 0.71 0.773711
Target:  5'- ----gAGCGCAgUgCG-ACGCCGCCCg -3'
miRNA:   3'- cauuaUCGCGUgA-GCaUGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 311 0.71 0.783272
Target:  5'- ----gGGCGCGCUU-UGCGCCGCUUCc -3'
miRNA:   3'- cauuaUCGCGUGAGcAUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 92650 0.71 0.791754
Target:  5'- uGUAGcGGCGCAC-CGUAaacgccacgcaacCGCCGgCCCg -3'
miRNA:   3'- -CAUUaUCGCGUGaGCAU-------------GUGGCgGGG- -5'
6815 5' -53 NC_001875.2 + 68852 0.71 0.801953
Target:  5'- ----gGGuCGCACgCGUGCGCgagUGCCCCg -3'
miRNA:   3'- cauuaUC-GCGUGaGCAUGUG---GCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.