miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6827 5' -50.9 NC_001875.2 + 44800 1.04 0.010652
Target:  5'- uUUGAACACGUGCGCUUUGAAGCGCAAa -3'
miRNA:   3'- -AACUUGUGCACGCGAAACUUCGCGUU- -5'
6827 5' -50.9 NC_001875.2 + 65907 0.72 0.77095
Target:  5'- -aGAAacCGCGgcUGCGCUUUGAucaGGCGCAGc -3'
miRNA:   3'- aaCUU--GUGC--ACGCGAAACU---UCGCGUU- -5'
6827 5' -50.9 NC_001875.2 + 88964 0.71 0.810223
Target:  5'- gUUGAACGCGuUGCGCUggcgGAccugcgccugcGGCGCGc -3'
miRNA:   3'- -AACUUGUGC-ACGCGAaa--CU-----------UCGCGUu -5'
6827 5' -50.9 NC_001875.2 + 54352 0.71 0.819598
Target:  5'- gUUGGACGCGcccgGCGCgUUGGgcgAGCGCAc -3'
miRNA:   3'- -AACUUGUGCa---CGCGaAACU---UCGCGUu -5'
6827 5' -50.9 NC_001875.2 + 84521 0.71 0.828774
Target:  5'- -cGAcaGCACGUGCGUcaucUUUGAagaAGCGCGc -3'
miRNA:   3'- aaCU--UGUGCACGCG----AAACU---UCGCGUu -5'
6827 5' -50.9 NC_001875.2 + 62455 0.71 0.837741
Target:  5'- gUGAcCACGUGCGUUUcggUGGacGGCGCGc -3'
miRNA:   3'- aACUuGUGCACGCGAA---ACU--UCGCGUu -5'
6827 5' -50.9 NC_001875.2 + 120276 0.7 0.846492
Target:  5'- -gGAACGCa-GCGCgaUGAAGCGCGu -3'
miRNA:   3'- aaCUUGUGcaCGCGaaACUUCGCGUu -5'
6827 5' -50.9 NC_001875.2 + 66921 0.7 0.846492
Target:  5'- cUGGGCACGggcaUGCGCaucaacGAGGCGCGAc -3'
miRNA:   3'- aACUUGUGC----ACGCGaaa---CUUCGCGUU- -5'
6827 5' -50.9 NC_001875.2 + 59078 0.7 0.871349
Target:  5'- uUUGAGgGCGacacacGCGCgUUGGAGCGCAc -3'
miRNA:   3'- -AACUUgUGCa-----CGCGaAACUUCGCGUu -5'
6827 5' -50.9 NC_001875.2 + 34112 0.7 0.879145
Target:  5'- -cGAGCGCGcGCGCUcgcgGucuAGCGCGAa -3'
miRNA:   3'- aaCUUGUGCaCGCGAaa--Cu--UCGCGUU- -5'
6827 5' -50.9 NC_001875.2 + 59606 0.7 0.879145
Target:  5'- -cGAGCACGgGCGCUUUGGcggauuGGCGgAc -3'
miRNA:   3'- aaCUUGUGCaCGCGAAACU------UCGCgUu -5'
6827 5' -50.9 NC_001875.2 + 85284 0.69 0.907712
Target:  5'- -cGAACACGguuUGCGCgg-GcGGCGCGGg -3'
miRNA:   3'- aaCUUGUGC---ACGCGaaaCuUCGCGUU- -5'
6827 5' -50.9 NC_001875.2 + 89264 0.69 0.907712
Target:  5'- cUGAcgcGCGCGUGCGCcgaccuGGCGCGg -3'
miRNA:   3'- aACU---UGUGCACGCGaaacu-UCGCGUu -5'
6827 5' -50.9 NC_001875.2 + 125636 0.69 0.914178
Target:  5'- -cGGACGCaauugcGCGCUUUGAaacGGCGCGc -3'
miRNA:   3'- aaCUUGUGca----CGCGAAACU---UCGCGUu -5'
6827 5' -50.9 NC_001875.2 + 79327 0.69 0.914178
Target:  5'- aUGAGCGCG-GCGCUgccuuuGGCGCc- -3'
miRNA:   3'- aACUUGUGCaCGCGAaacu--UCGCGuu -5'
6827 5' -50.9 NC_001875.2 + 89789 0.68 0.920367
Target:  5'- -cGuGCACGUGCGCgaacgcAGCGCGGg -3'
miRNA:   3'- aaCuUGUGCACGCGaaacu-UCGCGUU- -5'
6827 5' -50.9 NC_001875.2 + 111737 0.68 0.926278
Target:  5'- -cGAACACcUGCGaaUUGggGCGCc- -3'
miRNA:   3'- aaCUUGUGcACGCgaAACuuCGCGuu -5'
6827 5' -50.9 NC_001875.2 + 49994 0.68 0.926278
Target:  5'- --uGACGCG-GCGCUUgucgcgguUGggGCGCGc -3'
miRNA:   3'- aacUUGUGCaCGCGAA--------ACuuCGCGUu -5'
6827 5' -50.9 NC_001875.2 + 108069 0.68 0.931911
Target:  5'- cUGGGCaACGUGCGCUcUGcGGGCuGCAc -3'
miRNA:   3'- aACUUG-UGCACGCGAaAC-UUCG-CGUu -5'
6827 5' -50.9 NC_001875.2 + 79291 0.68 0.931911
Target:  5'- gUGGcGCGCGUGCGCgcauacuGGCGCGu -3'
miRNA:   3'- aACU-UGUGCACGCGaaacu--UCGCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.