miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6827 5' -50.9 NC_001875.2 + 2547 0.66 0.978774
Target:  5'- gUGAACaACG-GCGCguc-GGGCGCAAa -3'
miRNA:   3'- aACUUG-UGCaCGCGaaacUUCGCGUU- -5'
6827 5' -50.9 NC_001875.2 + 4855 0.66 0.978528
Target:  5'- -gGAACGCGUGCacagcucgugcacGCUgc--GGCGCAAa -3'
miRNA:   3'- aaCUUGUGCACG-------------CGAaacuUCGCGUU- -5'
6827 5' -50.9 NC_001875.2 + 4882 0.66 0.97343
Target:  5'- aUG-ACACGUGCGCUcgUGucGCcgGCAu -3'
miRNA:   3'- aACuUGUGCACGCGAa-ACuuCG--CGUu -5'
6827 5' -50.9 NC_001875.2 + 11993 0.66 0.976212
Target:  5'- gUUGGGCGCGgGUGUggUGGcgAGCGCGg -3'
miRNA:   3'- -AACUUGUGCaCGCGaaACU--UCGCGUu -5'
6827 5' -50.9 NC_001875.2 + 16441 0.67 0.963683
Target:  5'- -cGGACGCG-GCGUuugccUUUGAGGUGCc- -3'
miRNA:   3'- aaCUUGUGCaCGCG-----AAACUUCGCGuu -5'
6827 5' -50.9 NC_001875.2 + 32903 0.66 0.971652
Target:  5'- cUGAACACGcGCGCgucgcgcacGCGCAAc -3'
miRNA:   3'- aACUUGUGCaCGCGaaacuu---CGCGUU- -5'
6827 5' -50.9 NC_001875.2 + 34112 0.7 0.879145
Target:  5'- -cGAGCGCGcGCGCUcgcgGucuAGCGCGAa -3'
miRNA:   3'- aaCUUGUGCaCGCGAaa--Cu--UCGCGUU- -5'
6827 5' -50.9 NC_001875.2 + 34204 0.66 0.981126
Target:  5'- gUGAACACGaacGCGUUUUcu-GCGCAc -3'
miRNA:   3'- aACUUGUGCa--CGCGAAAcuuCGCGUu -5'
6827 5' -50.9 NC_001875.2 + 44800 1.04 0.010652
Target:  5'- uUUGAACACGUGCGCUUUGAAGCGCAAa -3'
miRNA:   3'- -AACUUGUGCACGCGAAACUUCGCGUU- -5'
6827 5' -50.9 NC_001875.2 + 44872 0.68 0.942836
Target:  5'- -aGAGCACGcuuUGCGCUUUGcgccgcuuggacgcuGGCGCu- -3'
miRNA:   3'- aaCUUGUGC---ACGCGAAACu--------------UCGCGuu -5'
6827 5' -50.9 NC_001875.2 + 48399 0.67 0.947146
Target:  5'- uUUGAAUACGUGuUGCUucaaUUGAacggcAGCGCGc -3'
miRNA:   3'- -AACUUGUGCAC-GCGA----AACU-----UCGCGUu -5'
6827 5' -50.9 NC_001875.2 + 49994 0.68 0.926278
Target:  5'- --uGACGCG-GCGCUUgucgcgguUGggGCGCGc -3'
miRNA:   3'- aacUUGUGCaCGCGAA--------ACuuCGCGUu -5'
6827 5' -50.9 NC_001875.2 + 53914 0.68 0.942343
Target:  5'- gUGGGCGCGccguugcggGCGCgUUGgcGCGCAc -3'
miRNA:   3'- aACUUGUGCa--------CGCGaAACuuCGCGUu -5'
6827 5' -50.9 NC_001875.2 + 54352 0.71 0.819598
Target:  5'- gUUGGACGCGcccgGCGCgUUGGgcgAGCGCAc -3'
miRNA:   3'- -AACUUGUGCa---CGCGaAACU---UCGCGUu -5'
6827 5' -50.9 NC_001875.2 + 59078 0.7 0.871349
Target:  5'- uUUGAGgGCGacacacGCGCgUUGGAGCGCAc -3'
miRNA:   3'- -AACUUgUGCa-----CGCGaAACUUCGCGUu -5'
6827 5' -50.9 NC_001875.2 + 59606 0.7 0.879145
Target:  5'- -cGAGCACGgGCGCUUUGGcggauuGGCGgAc -3'
miRNA:   3'- aaCUUGUGCaCGCGAAACU------UCGCgUu -5'
6827 5' -50.9 NC_001875.2 + 62349 0.66 0.976212
Target:  5'- gUGGGCGCG-GCGCcagUUUGGGucGCGCGc -3'
miRNA:   3'- aACUUGUGCaCGCG---AAACUU--CGCGUu -5'
6827 5' -50.9 NC_001875.2 + 62455 0.71 0.837741
Target:  5'- gUGAcCACGUGCGUUUcggUGGacGGCGCGc -3'
miRNA:   3'- aACUuGUGCACGCGAA---ACU--UCGCGUu -5'
6827 5' -50.9 NC_001875.2 + 65782 0.66 0.97042
Target:  5'- -cGAGCACGcGCGCggcgucGgcGCGCGGu -3'
miRNA:   3'- aaCUUGUGCaCGCGaaa---CuuCGCGUU- -5'
6827 5' -50.9 NC_001875.2 + 65907 0.72 0.77095
Target:  5'- -aGAAacCGCGgcUGCGCUUUGAucaGGCGCAGc -3'
miRNA:   3'- aaCUU--GUGC--ACGCGAAACU---UCGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.