miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
683 5' -63.3 AC_000018.1 + 8520 0.66 0.227129
Target:  5'- -aCugCCAGCCaUGCCGcCGgGUCCCGa -3'
miRNA:   3'- ucGugGGUCGG-GCGGUuGCaCGGGGC- -5'
683 5' -63.3 AC_000018.1 + 11020 0.66 0.21566
Target:  5'- cGGCACCC-GCCCaGCCGACuu-CUCCa -3'
miRNA:   3'- -UCGUGGGuCGGG-CGGUUGcacGGGGc -5'
683 5' -63.3 AC_000018.1 + 17920 0.67 0.194207
Target:  5'- aGGCGCCCccguucaguuGGCUCguGCCGAUGUcGCUCCa -3'
miRNA:   3'- -UCGUGGG----------UCGGG--CGGUUGCA-CGGGGc -5'
683 5' -63.3 AC_000018.1 + 10651 0.67 0.183709
Target:  5'- cGCGCCCguAGUcuggagaauuaaUCGCCAGgguugcguugcggUGUGCCCCGg -3'
miRNA:   3'- uCGUGGG--UCG------------GGCGGUU-------------GCACGGGGC- -5'
683 5' -63.3 AC_000018.1 + 12587 0.67 0.179365
Target:  5'- gAGCGCgUGGCCCGUuacaacagcagCAACGUGCaaaCCa -3'
miRNA:   3'- -UCGUGgGUCGGGCG-----------GUUGCACGg--GGc -5'
683 5' -63.3 AC_000018.1 + 18742 0.67 0.178888
Target:  5'- aAGCAUCCuGUCCGgCGAUGUGCauguaugCCCa -3'
miRNA:   3'- -UCGUGGGuCGGGCgGUUGCACG-------GGGc -5'
683 5' -63.3 AC_000018.1 + 9322 0.69 0.148593
Target:  5'- cGUcuGCCCGuGCgCCGCCGGCGUcGCCgCGu -3'
miRNA:   3'- uCG--UGGGU-CG-GGCGGUUGCA-CGGgGC- -5'
683 5' -63.3 AC_000018.1 + 11595 0.69 0.133243
Target:  5'- cGCACCCugaucGCCCGCgAGgaaGUGaCCCUGg -3'
miRNA:   3'- uCGUGGGu----CGGGCGgUUg--CAC-GGGGC- -5'
683 5' -63.3 AC_000018.1 + 25400 0.7 0.116111
Target:  5'- cGGUAUCCuGCCUGCCAccugcuguGCGcUGCCCUc -3'
miRNA:   3'- -UCGUGGGuCGGGCGGU--------UGC-ACGGGGc -5'
683 5' -63.3 AC_000018.1 + 1427 0.71 0.095561
Target:  5'- uAGUACCCGGaaaCUGCCAAggcaauaaGUGCCCUGc -3'
miRNA:   3'- -UCGUGGGUCg--GGCGGUUg-------CACGGGGC- -5'
683 5' -63.3 AC_000018.1 + 12730 1.07 0.000119
Target:  5'- cAGCACCCAGCCCGCCAACGUGCCCCGu -3'
miRNA:   3'- -UCGUGGGUCGGGCGGUUGCACGGGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.