miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6837 3' -54.2 NC_001875.2 + 94722 0.66 0.932893
Target:  5'- gACGcaaACGCCGGCGCgGCgccGCgcccGCACa -3'
miRNA:   3'- -UGCuuaUGCGGUUGCG-CGa--CGa---CGUG- -5'
6837 3' -54.2 NC_001875.2 + 125410 0.66 0.932893
Target:  5'- uACGAcgGCGCgCAaauggugaagAUGgGCuUGCUGUACa -3'
miRNA:   3'- -UGCUuaUGCG-GU----------UGCgCG-ACGACGUG- -5'
6837 3' -54.2 NC_001875.2 + 53434 0.66 0.932893
Target:  5'- cGCGcacACgGCCAGCGCG-UGCaGCACu -3'
miRNA:   3'- -UGCuuaUG-CGGUUGCGCgACGaCGUG- -5'
6837 3' -54.2 NC_001875.2 + 17264 0.66 0.932893
Target:  5'- cGCGuu--UGCCGACGCGCacaauccGCcGCACu -3'
miRNA:   3'- -UGCuuauGCGGUUGCGCGa------CGaCGUG- -5'
6837 3' -54.2 NC_001875.2 + 105765 0.66 0.932893
Target:  5'- aACGug-ACGCC--CGCGCUGCaaUGgACa -3'
miRNA:   3'- -UGCuuaUGCGGuuGCGCGACG--ACgUG- -5'
6837 3' -54.2 NC_001875.2 + 66059 0.66 0.932893
Target:  5'- cGCGccgACGCC-GCGCGCgUGCU-CGCc -3'
miRNA:   3'- -UGCuuaUGCGGuUGCGCG-ACGAcGUG- -5'
6837 3' -54.2 NC_001875.2 + 3652 0.66 0.932893
Target:  5'- ------cCGCUGGCGUGUgUGCUGCGCg -3'
miRNA:   3'- ugcuuauGCGGUUGCGCG-ACGACGUG- -5'
6837 3' -54.2 NC_001875.2 + 129289 0.66 0.932893
Target:  5'- -aGAGUuuGCGcCCGACGCGCcGUUGUuCa -3'
miRNA:   3'- ugCUUA--UGC-GGUUGCGCGaCGACGuG- -5'
6837 3' -54.2 NC_001875.2 + 62426 0.66 0.932893
Target:  5'- aGCGuuUGCGCU---GCGCcgGCUGCAa -3'
miRNA:   3'- -UGCuuAUGCGGuugCGCGa-CGACGUg -5'
6837 3' -54.2 NC_001875.2 + 98195 0.66 0.932893
Target:  5'- cCGAcgGCGUCGAgGUGagcgGCUGCAa -3'
miRNA:   3'- uGCUuaUGCGGUUgCGCga--CGACGUg -5'
6837 3' -54.2 NC_001875.2 + 113261 0.66 0.932893
Target:  5'- cGCGcAAUagGCGCCAACGaCGCaaaGC-GCGCu -3'
miRNA:   3'- -UGC-UUA--UGCGGUUGC-GCGa--CGaCGUG- -5'
6837 3' -54.2 NC_001875.2 + 91395 0.66 0.932893
Target:  5'- uUGaAAUGCGCCAGCG-GCaGCUcGCAa -3'
miRNA:   3'- uGC-UUAUGCGGUUGCgCGaCGA-CGUg -5'
6837 3' -54.2 NC_001875.2 + 120771 0.66 0.932893
Target:  5'- gGCGc--GCGCC-ACGCcaaaCUGCUGCAg -3'
miRNA:   3'- -UGCuuaUGCGGuUGCGc---GACGACGUg -5'
6837 3' -54.2 NC_001875.2 + 77658 0.66 0.93237
Target:  5'- cUGGuggACGCCAACGCagcgccGCUGUccgagcgcguauuUGCGCg -3'
miRNA:   3'- uGCUua-UGCGGUUGCG------CGACG-------------ACGUG- -5'
6837 3' -54.2 NC_001875.2 + 76961 0.66 0.93237
Target:  5'- gACGAGUccGCGUucgggagCAACGUGCUGCacuacUGCGa -3'
miRNA:   3'- -UGCUUA--UGCG-------GUUGCGCGACG-----ACGUg -5'
6837 3' -54.2 NC_001875.2 + 21458 0.66 0.927547
Target:  5'- -aGAGUACcUCAACuuGCUGCaGCACg -3'
miRNA:   3'- ugCUUAUGcGGUUGcgCGACGaCGUG- -5'
6837 3' -54.2 NC_001875.2 + 36044 0.66 0.927547
Target:  5'- -aGuGUACGUUuACGCGUUGCgguuUGCGCa -3'
miRNA:   3'- ugCuUAUGCGGuUGCGCGACG----ACGUG- -5'
6837 3' -54.2 NC_001875.2 + 85348 0.66 0.927547
Target:  5'- cGCGA--ACGCCGACGCcGUgGCgGCGu -3'
miRNA:   3'- -UGCUuaUGCGGUUGCG-CGaCGaCGUg -5'
6837 3' -54.2 NC_001875.2 + 37507 0.66 0.927547
Target:  5'- gGCGAcgGUGCGgaCGACGCGCccUGcCUGgACg -3'
miRNA:   3'- -UGCU--UAUGCg-GUUGCGCG--AC-GACgUG- -5'
6837 3' -54.2 NC_001875.2 + 34356 0.66 0.927547
Target:  5'- cGCGcg-GCGCaagaGACGCaGUUGCUGC-Cg -3'
miRNA:   3'- -UGCuuaUGCGg---UUGCG-CGACGACGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.