miRNA display CGI


Results 41 - 60 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 71897 0.66 0.683292
Target:  5'- uACUCGuCGaccaGCCGCGaCACGGCAcugaUGaGCg -3'
miRNA:   3'- -UGAGC-GCg---CGGUGC-GUGUCGU----ACcCG- -5'
6840 5' -59.8 NC_001875.2 + 10416 0.66 0.683292
Target:  5'- ---gGCGCGCCGUGCAUcccgaccccaAGCAaucauacucgaUGGGCa -3'
miRNA:   3'- ugagCGCGCGGUGCGUG----------UCGU-----------ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 50140 0.66 0.683292
Target:  5'- cGCUCuuccaGCGCCugGCGCGccuucuGCAUGGccGCc -3'
miRNA:   3'- -UGAGcg---CGCGGugCGUGU------CGUACC--CG- -5'
6840 5' -59.8 NC_001875.2 + 94769 0.66 0.683292
Target:  5'- -gUCGUcCGCCAaaCACAGCGUGGccGCg -3'
miRNA:   3'- ugAGCGcGCGGUgcGUGUCGUACC--CG- -5'
6840 5' -59.8 NC_001875.2 + 23799 0.66 0.683292
Target:  5'- cGC-CGaCGUGUCGCucCGCGGCGUcGGGCg -3'
miRNA:   3'- -UGaGC-GCGCGGUGc-GUGUCGUA-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 85296 0.66 0.683292
Target:  5'- --gCGCGgGCgGCGCG-GGCGcGGGCa -3'
miRNA:   3'- ugaGCGCgCGgUGCGUgUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 45462 0.66 0.683292
Target:  5'- cGCUCgGCGCccgcaGCCGCGCGucUAGCGcGGuGCc -3'
miRNA:   3'- -UGAG-CGCG-----CGGUGCGU--GUCGUaCC-CG- -5'
6840 5' -59.8 NC_001875.2 + 100762 0.66 0.683292
Target:  5'- uUUUGCGCGgCGCuuGCACAGguUGagcGGCa -3'
miRNA:   3'- uGAGCGCGCgGUG--CGUGUCguAC---CCG- -5'
6840 5' -59.8 NC_001875.2 + 10639 0.66 0.683292
Target:  5'- --gUGC-CGCCcaGCGUGCAGUAcuUGGGCg -3'
miRNA:   3'- ugaGCGcGCGG--UGCGUGUCGU--ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 78471 0.66 0.673243
Target:  5'- cGCUCGCuGCGCCGCaGUuugaACAGguUGucGGUg -3'
miRNA:   3'- -UGAGCG-CGCGGUG-CG----UGUCguAC--CCG- -5'
6840 5' -59.8 NC_001875.2 + 39328 0.66 0.673243
Target:  5'- gGCgugCGCGCGCUGCagGCGCAGCcUGacGCu -3'
miRNA:   3'- -UGa--GCGCGCGGUG--CGUGUCGuACc-CG- -5'
6840 5' -59.8 NC_001875.2 + 85465 0.66 0.673243
Target:  5'- -gUCGC-UGCaCAUGCGCAGCAgcUGcGGCc -3'
miRNA:   3'- ugAGCGcGCG-GUGCGUGUCGU--AC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 25998 0.66 0.673243
Target:  5'- gACUCGUgguggccgucgGCGCCuggGCGguCAGCAUGcuguuGGCc -3'
miRNA:   3'- -UGAGCG-----------CGCGG---UGCguGUCGUAC-----CCG- -5'
6840 5' -59.8 NC_001875.2 + 110084 0.66 0.672236
Target:  5'- cGCUgCGCGUggaggccGCCACGCGCGGCcagaGCa -3'
miRNA:   3'- -UGA-GCGCG-------CGGUGCGUGUCGuaccCG- -5'
6840 5' -59.8 NC_001875.2 + 30622 0.66 0.672236
Target:  5'- aACUgCGCGCaaccaaaGCCGuCGacaaACGGCAaguUGGGCg -3'
miRNA:   3'- -UGA-GCGCG-------CGGU-GCg---UGUCGU---ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 90036 0.66 0.670222
Target:  5'- cGC-CGCGCGCCAUGuUGCAGCAcuacaacgagugccUGGa- -3'
miRNA:   3'- -UGaGCGCGCGGUGC-GUGUCGU--------------ACCcg -5'
6840 5' -59.8 NC_001875.2 + 30572 0.67 0.663162
Target:  5'- uUUUGUGCuCCAUGCGCAGCAUGc-- -3'
miRNA:   3'- uGAGCGCGcGGUGCGUGUCGUACccg -5'
6840 5' -59.8 NC_001875.2 + 3775 0.67 0.663162
Target:  5'- uUUCGCGCGCaauguCGUcCAGU-UGGGCc -3'
miRNA:   3'- uGAGCGCGCGgu---GCGuGUCGuACCCG- -5'
6840 5' -59.8 NC_001875.2 + 37878 0.67 0.663162
Target:  5'- aACg-GCGgGCCGCGC-CAGCGgcuugcUGGcGCg -3'
miRNA:   3'- -UGagCGCgCGGUGCGuGUCGU------ACC-CG- -5'
6840 5' -59.8 NC_001875.2 + 6193 0.67 0.663162
Target:  5'- uGCcCGCGCGCCguuucaaaGCGCGCAauuGCGUccgucGGCg -3'
miRNA:   3'- -UGaGCGCGCGG--------UGCGUGU---CGUAc----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.