miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6844 3' -55 NC_001875.2 + 100882 0.67 0.858966
Target:  5'- -cGCAGcGCGCGCGUggGcGCCAUGgcgagaccuGUGCg -3'
miRNA:   3'- uaCGUU-CGUGCGCAa-C-CGGUGU---------CACG- -5'
6844 3' -55 NC_001875.2 + 57801 0.67 0.858966
Target:  5'- -aGCAGcGCgguuuuuaGCGCGgcaaucuugUGcGCCGCGGUGCu -3'
miRNA:   3'- uaCGUU-CG--------UGCGCa--------AC-CGGUGUCACG- -5'
6844 3' -55 NC_001875.2 + 120727 0.67 0.858966
Target:  5'- -cGCGAGUuugauuugaGCG-UGGCCGCAGaGCc -3'
miRNA:   3'- uaCGUUCGug-------CGCaACCGGUGUCaCG- -5'
6844 3' -55 NC_001875.2 + 18651 0.67 0.8509
Target:  5'- -gGUggGCACGuCGcagcGcGUCACGGUGCg -3'
miRNA:   3'- uaCGuuCGUGC-GCaa--C-CGGUGUCACG- -5'
6844 3' -55 NC_001875.2 + 70330 0.67 0.8509
Target:  5'- -cGCGAGCACGCGgacugcgGcGCCGagcCGGcGCg -3'
miRNA:   3'- uaCGUUCGUGCGCaa-----C-CGGU---GUCaCG- -5'
6844 3' -55 NC_001875.2 + 36414 0.67 0.842622
Target:  5'- -cGCAcGCugGCcg-GcGCCGCGGUGUc -3'
miRNA:   3'- uaCGUuCGugCGcaaC-CGGUGUCACG- -5'
6844 3' -55 NC_001875.2 + 156 0.67 0.842622
Target:  5'- -gGCAGGCACGCGgc-GCCaaACAcGUGg -3'
miRNA:   3'- uaCGUUCGUGCGCaacCGG--UGU-CACg -5'
6844 3' -55 NC_001875.2 + 22578 0.67 0.842622
Target:  5'- -cGCccGGGCgcgGCGCGUUGGCCGgcCGGcUGUa -3'
miRNA:   3'- uaCG--UUCG---UGCGCAACCGGU--GUC-ACG- -5'
6844 3' -55 NC_001875.2 + 41806 0.67 0.842622
Target:  5'- -cGCcGGCACGCGcgccgGcGCCGCGGccaguUGCg -3'
miRNA:   3'- uaCGuUCGUGCGCaa---C-CGGUGUC-----ACG- -5'
6844 3' -55 NC_001875.2 + 12008 0.67 0.842622
Target:  5'- -cGCAGGCAcCGUGUUGGagaACGuGUGUu -3'
miRNA:   3'- uaCGUUCGU-GCGCAACCgg-UGU-CACG- -5'
6844 3' -55 NC_001875.2 + 83251 0.67 0.842622
Target:  5'- cGUGUAccacucuuuaaGGCACGCGUacaUGGCCGguuuGUGUu -3'
miRNA:   3'- -UACGU-----------UCGUGCGCA---ACCGGUgu--CACG- -5'
6844 3' -55 NC_001875.2 + 34350 0.67 0.842622
Target:  5'- -aGCAAGCGCGCGgcGcaagagaCGCAGUuGCu -3'
miRNA:   3'- uaCGUUCGUGCGCaaCcg-----GUGUCA-CG- -5'
6844 3' -55 NC_001875.2 + 35654 0.67 0.842622
Target:  5'- -cGCAAGUGCGC---GGCCAuCAG-GCa -3'
miRNA:   3'- uaCGUUCGUGCGcaaCCGGU-GUCaCG- -5'
6844 3' -55 NC_001875.2 + 113481 0.67 0.842622
Target:  5'- uUGCAuuAGCACGcCGUUGGCguCcaUGCc -3'
miRNA:   3'- uACGU--UCGUGC-GCAACCGguGucACG- -5'
6844 3' -55 NC_001875.2 + 72066 0.67 0.837556
Target:  5'- cUGCGaaauuaAGCACGuCGUUGGgCGCcgugguuucgcgcaaAGUGCu -3'
miRNA:   3'- uACGU------UCGUGC-GCAACCgGUG---------------UCACG- -5'
6844 3' -55 NC_001875.2 + 61548 0.67 0.834138
Target:  5'- cAUGUggGaCACgguGCGUUGGCa--GGUGCu -3'
miRNA:   3'- -UACGuuC-GUG---CGCAACCGgugUCACG- -5'
6844 3' -55 NC_001875.2 + 65439 0.67 0.833279
Target:  5'- cGUGCAccGCugGCGgucggUGGCCaggucgaACAcGUGCu -3'
miRNA:   3'- -UACGUu-CGugCGCa----ACCGG-------UGU-CACG- -5'
6844 3' -55 NC_001875.2 + 110280 0.67 0.831555
Target:  5'- -cGCgGAGCGCGCG--GGCUgccccgucgccgagACGGUGCu -3'
miRNA:   3'- uaCG-UUCGUGCGCaaCCGG--------------UGUCACG- -5'
6844 3' -55 NC_001875.2 + 44451 0.67 0.825458
Target:  5'- -aGCAAgGCGC-CGUcGG-CGCAGUGCg -3'
miRNA:   3'- uaCGUU-CGUGcGCAaCCgGUGUCACG- -5'
6844 3' -55 NC_001875.2 + 18159 0.67 0.825458
Target:  5'- gGUGCGGcGCGCGCGac-GCCGCcacuguggcGGUGCc -3'
miRNA:   3'- -UACGUU-CGUGCGCaacCGGUG---------UCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.