Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6849 | 5' | -50.6 | NC_001875.2 | + | 18207 | 0.66 | 0.996681 |
Target: 5'- uGAuuACGcGGcGcCGUCGccgcucUUGCCGCCg -3' miRNA: 3'- cCUuuUGC-CC-CaGCAGCu-----AAUGGCGG- -5' |
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6849 | 5' | -50.6 | NC_001875.2 | + | 80120 | 0.66 | 0.995447 |
Target: 5'- uGAAGGCccauGGGUCGUCGcacucgUGCgCGUCg -3' miRNA: 3'- cCUUUUGc---CCCAGCAGCua----AUG-GCGG- -5' |
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6849 | 5' | -50.6 | NC_001875.2 | + | 54094 | 0.66 | 0.995447 |
Target: 5'- ----cACGGGGUCGaUGc--GCUGCCa -3' miRNA: 3'- ccuuuUGCCCCAGCaGCuaaUGGCGG- -5' |
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6849 | 5' | -50.6 | NC_001875.2 | + | 130018 | 0.66 | 0.992918 |
Target: 5'- -aAAAGCaGGGUCGUUGcugacgcACCGCUa -3' miRNA: 3'- ccUUUUGcCCCAGCAGCuaa----UGGCGG- -5' |
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6849 | 5' | -50.6 | NC_001875.2 | + | 92719 | 0.66 | 0.992918 |
Target: 5'- cGGu---CaGGGUCGUC----GCCGCCa -3' miRNA: 3'- -CCuuuuGcCCCAGCAGcuaaUGGCGG- -5' |
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6849 | 5' | -50.6 | NC_001875.2 | + | 113843 | 0.66 | 0.992918 |
Target: 5'- cGGGu--CGGGGUCGg-----GCCGCa -3' miRNA: 3'- -CCUuuuGCCCCAGCagcuaaUGGCGg -5' |
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6849 | 5' | -50.6 | NC_001875.2 | + | 116220 | 0.67 | 0.991861 |
Target: 5'- uGGAAGuACa-GGUCGUCGuacUUGCCGUUa -3' miRNA: 3'- -CCUUU-UGccCCAGCAGCu--AAUGGCGG- -5' |
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6849 | 5' | -50.6 | NC_001875.2 | + | 98206 | 0.67 | 0.986334 |
Target: 5'- cGAAAACGacGUCGUCGAguuugUGCaCGCg -3' miRNA: 3'- cCUUUUGCccCAGCAGCUa----AUG-GCGg -5' |
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6849 | 5' | -50.6 | NC_001875.2 | + | 102006 | 0.68 | 0.985302 |
Target: 5'- cGGGc-ACGGGGcCGUCGGccgUGCCcgagaaauauuugucGCCg -3' miRNA: 3'- -CCUuuUGCCCCaGCAGCUa--AUGG---------------CGG- -5' |
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6849 | 5' | -50.6 | NC_001875.2 | + | 56459 | 0.68 | 0.982665 |
Target: 5'- cGGu-GGCGGGGUCcgcgcgcguGUUGGUcAgCGCCa -3' miRNA: 3'- -CCuuUUGCCCCAG---------CAGCUAaUgGCGG- -5' |
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6849 | 5' | -50.6 | NC_001875.2 | + | 4520 | 0.68 | 0.981432 |
Target: 5'- cGGAAAGCGGcgcaccgccggcugcGGUUccugCGGUUuggggGCCGCCa -3' miRNA: 3'- -CCUUUUGCC---------------CCAGca--GCUAA-----UGGCGG- -5' |
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6849 | 5' | -50.6 | NC_001875.2 | + | 105841 | 0.68 | 0.9783 |
Target: 5'- cGGcuguUGGGGUCcagCGA--GCCGCCg -3' miRNA: 3'- -CCuuuuGCCCCAGca-GCUaaUGGCGG- -5' |
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6849 | 5' | -50.6 | NC_001875.2 | + | 84759 | 0.68 | 0.97758 |
Target: 5'- -----uCGGGGUCGUCGcaaaacggaaucucGcUGCCGCUc -3' miRNA: 3'- ccuuuuGCCCCAGCAGC--------------UaAUGGCGG- -5' |
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6849 | 5' | -50.6 | NC_001875.2 | + | 31522 | 0.69 | 0.97317 |
Target: 5'- cGAAGGCGgcGGGUCGUUGAacggcaccacUUGCaCGCg -3' miRNA: 3'- cCUUUUGC--CCCAGCAGCU----------AAUG-GCGg -5' |
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6849 | 5' | -50.6 | NC_001875.2 | + | 64147 | 0.69 | 0.960383 |
Target: 5'- aGAAGACGGGcG-CGUCGAUccUgGCCc -3' miRNA: 3'- cCUUUUGCCC-CaGCAGCUAauGgCGG- -5' |
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6849 | 5' | -50.6 | NC_001875.2 | + | 60913 | 0.7 | 0.952625 |
Target: 5'- cGAAAGCGGGGcCGgcgcUGAcgcACCGCUa -3' miRNA: 3'- cCUUUUGCCCCaGCa---GCUaa-UGGCGG- -5' |
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6849 | 5' | -50.6 | NC_001875.2 | + | 130342 | 0.7 | 0.952625 |
Target: 5'- -aAAGGCaGGGUCGUCGcugacgcACCGCUa -3' miRNA: 3'- ccUUUUGcCCCAGCAGCuaa----UGGCGG- -5' |
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6849 | 5' | -50.6 | NC_001875.2 | + | 57949 | 0.7 | 0.943905 |
Target: 5'- -cGAAACGcGGUCGUgCGGg-ACCGCCg -3' miRNA: 3'- ccUUUUGCcCCAGCA-GCUaaUGGCGG- -5' |
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6849 | 5' | -50.6 | NC_001875.2 | + | 91542 | 0.7 | 0.939177 |
Target: 5'- uGGAAu-CGGGGUgcagccCGUUGcccGCCGCCa -3' miRNA: 3'- -CCUUuuGCCCCA------GCAGCuaaUGGCGG- -5' |
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6849 | 5' | -50.6 | NC_001875.2 | + | 130276 | 0.71 | 0.934201 |
Target: 5'- -aAAAGCaGGGUCGUCGcugacgcACCGCUa -3' miRNA: 3'- ccUUUUGcCCCAGCAGCuaa----UGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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