miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6849 5' -50.6 NC_001875.2 + 130570 0.71 0.923496
Target:  5'- -aAAAGCaGGGUCGcCGAUgacgcACCGCUa -3'
miRNA:   3'- ccUUUUGcCCCAGCaGCUAa----UGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 130342 0.7 0.952625
Target:  5'- -aAAGGCaGGGUCGUCGcugacgcACCGCUa -3'
miRNA:   3'- ccUUUUGcCCCAGCAGCuaa----UGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 130276 0.71 0.934201
Target:  5'- -aAAAGCaGGGUCGUCGcugacgcACCGCUa -3'
miRNA:   3'- ccUUUUGcCCCAGCAGCuaa----UGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 130210 0.71 0.934201
Target:  5'- -aAAAGCaGGGUCGUCGcugacgcACCGCUa -3'
miRNA:   3'- ccUUUUGcCCCAGCAGCuaa----UGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 130144 0.71 0.934201
Target:  5'- -aAAAGCaGGGUCGUCGcugacgcACCGCUa -3'
miRNA:   3'- ccUUUUGcCCCAGCAGCuaa----UGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 130018 0.66 0.992918
Target:  5'- -aAAAGCaGGGUCGUUGcugacgcACCGCUa -3'
miRNA:   3'- ccUUUUGcCCCAGCAGCuaa----UGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 124262 0.71 0.911789
Target:  5'- cGAcAGGCGGcgcguuGGUCGUCGAcgacccGCCGCCu -3'
miRNA:   3'- cCU-UUUGCC------CCAGCAGCUaa----UGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 116220 0.67 0.991861
Target:  5'- uGGAAGuACa-GGUCGUCGuacUUGCCGUUa -3'
miRNA:   3'- -CCUUU-UGccCCAGCAGCu--AAUGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 113843 0.66 0.992918
Target:  5'- cGGGu--CGGGGUCGg-----GCCGCa -3'
miRNA:   3'- -CCUuuuGCCCCAGCagcuaaUGGCGg -5'
6849 5' -50.6 NC_001875.2 + 110729 0.74 0.803939
Target:  5'- cGGAGAACGcGGGgcgCGUgcaguuuaagcgCGGcgACCGCCg -3'
miRNA:   3'- -CCUUUUGC-CCCa--GCA------------GCUaaUGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 105841 0.68 0.9783
Target:  5'- cGGcuguUGGGGUCcagCGA--GCCGCCg -3'
miRNA:   3'- -CCuuuuGCCCCAGca-GCUaaUGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 102006 0.68 0.985302
Target:  5'- cGGGc-ACGGGGcCGUCGGccgUGCCcgagaaauauuugucGCCg -3'
miRNA:   3'- -CCUuuUGCCCCaGCAGCUa--AUGG---------------CGG- -5'
6849 5' -50.6 NC_001875.2 + 101102 0.73 0.863165
Target:  5'- -aAAAGCGGGGUCGcCGcugacgcACCGCUa -3'
miRNA:   3'- ccUUUUGCCCCAGCaGCuaa----UGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 98206 0.67 0.986334
Target:  5'- cGAAAACGacGUCGUCGAguuugUGCaCGCg -3'
miRNA:   3'- cCUUUUGCccCAGCAGCUa----AUG-GCGg -5'
6849 5' -50.6 NC_001875.2 + 95376 0.71 0.923496
Target:  5'- cGGAAAACGGcGUCGuguccaauUCGA--GCCGCa -3'
miRNA:   3'- -CCUUUUGCCcCAGC--------AGCUaaUGGCGg -5'
6849 5' -50.6 NC_001875.2 + 92719 0.66 0.992918
Target:  5'- cGGu---CaGGGUCGUC----GCCGCCa -3'
miRNA:   3'- -CCuuuuGcCCCAGCAGcuaaUGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 91542 0.7 0.939177
Target:  5'- uGGAAu-CGGGGUgcagccCGUUGcccGCCGCCa -3'
miRNA:   3'- -CCUUuuGCCCCA------GCAGCuaaUGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 90695 0.76 0.716566
Target:  5'- cGAcGAUGGGGUUGcCGGcgcgGCCGCCg -3'
miRNA:   3'- cCUuUUGCCCCAGCaGCUaa--UGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 89832 0.71 0.917767
Target:  5'- cGGuuAACGGGccCGcCGAUUuuuucACCGCCg -3'
miRNA:   3'- -CCuuUUGCCCcaGCaGCUAA-----UGGCGG- -5'
6849 5' -50.6 NC_001875.2 + 84759 0.68 0.97758
Target:  5'- -----uCGGGGUCGUCGcaaaacggaaucucGcUGCCGCUc -3'
miRNA:   3'- ccuuuuGCCCCAGCAGC--------------UaAUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.