miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6853 5' -57.9 NC_001875.2 + 434 0.67 0.755811
Target:  5'- uUGCAUGUC-CGCcaauguggucUGCagCGCGGUGAc -3'
miRNA:   3'- cAUGUGCAGcGCG----------ACGagGCGCCACU- -5'
6853 5' -57.9 NC_001875.2 + 2944 0.7 0.595393
Target:  5'- -cGCGCGcuggCGCGCuUGCUCggcaGCGGUGu -3'
miRNA:   3'- caUGUGCa---GCGCG-ACGAGg---CGCCACu -5'
6853 5' -57.9 NC_001875.2 + 4497 0.75 0.297163
Target:  5'- -cACACGUUGCGuCUGCUCCGCuGcgGAa -3'
miRNA:   3'- caUGUGCAGCGC-GACGAGGCGcCa-CU- -5'
6853 5' -57.9 NC_001875.2 + 4901 0.66 0.810786
Target:  5'- --uCGCGcCGCaGCUGCUCC-CGGUc- -3'
miRNA:   3'- cauGUGCaGCG-CGACGAGGcGCCAcu -5'
6853 5' -57.9 NC_001875.2 + 6942 0.69 0.64631
Target:  5'- -aACGCGUCGUGCgUGCgCCGCGa--- -3'
miRNA:   3'- caUGUGCAGCGCG-ACGaGGCGCcacu -5'
6853 5' -57.9 NC_001875.2 + 6970 0.66 0.810786
Target:  5'- --cCACGgCGCGCUGCUUgacaGCGGg-- -3'
miRNA:   3'- cauGUGCaGCGCGACGAGg---CGCCacu -5'
6853 5' -57.9 NC_001875.2 + 12433 0.71 0.515626
Target:  5'- -gGC-CGUUGCG-UGCgcgCCGCGGUGGa -3'
miRNA:   3'- caUGuGCAGCGCgACGa--GGCGCCACU- -5'
6853 5' -57.9 NC_001875.2 + 17058 0.67 0.765297
Target:  5'- -aACGCGa-GCaGCUGC-CCGCuGGUGAa -3'
miRNA:   3'- caUGUGCagCG-CGACGaGGCG-CCACU- -5'
6853 5' -57.9 NC_001875.2 + 21893 1.09 0.001674
Target:  5'- cGUACACGUCGCGCUGCUCCGCGGUGAg -3'
miRNA:   3'- -CAUGUGCAGCGCGACGAGGCGCCACU- -5'
6853 5' -57.9 NC_001875.2 + 22419 0.67 0.751986
Target:  5'- cGUACACGgccugcaUC-CGUUGCUCCauuucgggcguggcGCGGUGGu -3'
miRNA:   3'- -CAUGUGC-------AGcGCGACGAGG--------------CGCCACU- -5'
6853 5' -57.9 NC_001875.2 + 23783 0.66 0.814266
Target:  5'- -cGCACGUugcccaggucgccgaCGUGUcGCUCCGCGGc-- -3'
miRNA:   3'- caUGUGCA---------------GCGCGaCGAGGCGCCacu -5'
6853 5' -57.9 NC_001875.2 + 24003 0.67 0.726739
Target:  5'- -cGCGCGUCGCaaggcgcaccggGCgcggGCUCgGCGGUc- -3'
miRNA:   3'- caUGUGCAGCG------------CGa---CGAGgCGCCAcu -5'
6853 5' -57.9 NC_001875.2 + 33853 0.68 0.663608
Target:  5'- -aACACGUCGCGCaccgUGCgcggCCGgcagaacggcguuuCGGUGGc -3'
miRNA:   3'- caUGUGCAGCGCG----ACGa---GGC--------------GCCACU- -5'
6853 5' -57.9 NC_001875.2 + 35382 0.68 0.716875
Target:  5'- -aGCugGagGCGCUGCugUCCGUGGc-- -3'
miRNA:   3'- caUGugCagCGCGACG--AGGCGCCacu -5'
6853 5' -57.9 NC_001875.2 + 40192 0.69 0.615731
Target:  5'- cGUACGCGUaCGgccaGCUGCUgCGCGGc-- -3'
miRNA:   3'- -CAUGUGCA-GCg---CGACGAgGCGCCacu -5'
6853 5' -57.9 NC_001875.2 + 40652 0.66 0.801976
Target:  5'- -cGCACG-CGCcgGCUGUUgCGCGGcGAc -3'
miRNA:   3'- caUGUGCaGCG--CGACGAgGCGCCaCU- -5'
6853 5' -57.9 NC_001875.2 + 41810 0.68 0.69694
Target:  5'- -gGCACG-CGCGCcgGCgCCGCGGc-- -3'
miRNA:   3'- caUGUGCaGCGCGa-CGaGGCGCCacu -5'
6853 5' -57.9 NC_001875.2 + 42586 0.66 0.801976
Target:  5'- -cGCACG-CGCGCgucaGCUCgGCGcUGGg -3'
miRNA:   3'- caUGUGCaGCGCGa---CGAGgCGCcACU- -5'
6853 5' -57.9 NC_001875.2 + 42686 0.66 0.810786
Target:  5'- cGUGCACGaaacCGCGCgGCg-CGCGGUu- -3'
miRNA:   3'- -CAUGUGCa---GCGCGaCGagGCGCCAcu -5'
6853 5' -57.9 NC_001875.2 + 43643 0.69 0.64631
Target:  5'- uGUACACGUUGUGC-GCgCCGuUGGUGc -3'
miRNA:   3'- -CAUGUGCAGCGCGaCGaGGC-GCCACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.