miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6853 5' -57.9 NC_001875.2 + 42686 0.66 0.810786
Target:  5'- cGUGCACGaaacCGCGCgGCg-CGCGGUu- -3'
miRNA:   3'- -CAUGUGCa---GCGCGaCGagGCGCCAcu -5'
6853 5' -57.9 NC_001875.2 + 45219 0.67 0.746216
Target:  5'- cGUACACGUCGCGCgcgaacagGCggCGCGu--- -3'
miRNA:   3'- -CAUGUGCAGCGCGa-------CGagGCGCcacu -5'
6853 5' -57.9 NC_001875.2 + 73133 0.67 0.746216
Target:  5'- uUGCGCGUCGCGCUGUaCaCGCu---- -3'
miRNA:   3'- cAUGUGCAGCGCGACGaG-GCGccacu -5'
6853 5' -57.9 NC_001875.2 + 17058 0.67 0.765297
Target:  5'- -aACGCGa-GCaGCUGC-CCGCuGGUGAa -3'
miRNA:   3'- caUGUGCagCG-CGACGaGGCG-CCACU- -5'
6853 5' -57.9 NC_001875.2 + 42586 0.66 0.801976
Target:  5'- -cGCACG-CGCGCgucaGCUCgGCGcUGGg -3'
miRNA:   3'- caUGUGCaGCGCGa---CGAGgCGCcACU- -5'
6853 5' -57.9 NC_001875.2 + 64760 0.66 0.801976
Target:  5'- uUGCGCGcguagaucUCGCGCgccaGCUCCaGCGGcuUGGu -3'
miRNA:   3'- cAUGUGC--------AGCGCGa---CGAGG-CGCC--ACU- -5'
6853 5' -57.9 NC_001875.2 + 108989 0.66 0.810786
Target:  5'- -gACGCaaucaacucgGUCGCGCaaacGCUUCGCGGcGAa -3'
miRNA:   3'- caUGUG----------CAGCGCGa---CGAGGCGCCaCU- -5'
6853 5' -57.9 NC_001875.2 + 4901 0.66 0.810786
Target:  5'- --uCGCGcCGCaGCUGCUCC-CGGUc- -3'
miRNA:   3'- cauGUGCaGCG-CGACGAGGcGCCAcu -5'
6853 5' -57.9 NC_001875.2 + 6970 0.66 0.810786
Target:  5'- --cCACGgCGCGCUGCUUgacaGCGGg-- -3'
miRNA:   3'- cauGUGCaGCGCGACGAGg---CGCCacu -5'
6853 5' -57.9 NC_001875.2 + 85149 0.67 0.736523
Target:  5'- --cCACGUCGCGCaccuugaacucGCUCgaCGUGGUGGu -3'
miRNA:   3'- cauGUGCAGCGCGa----------CGAG--GCGCCACU- -5'
6853 5' -57.9 NC_001875.2 + 35382 0.68 0.716875
Target:  5'- -aGCugGagGCGCUGCugUCCGUGGc-- -3'
miRNA:   3'- caUGugCagCGCGACG--AGGCGCCacu -5'
6853 5' -57.9 NC_001875.2 + 41810 0.68 0.69694
Target:  5'- -gGCACG-CGCGCcgGCgCCGCGGc-- -3'
miRNA:   3'- caUGUGCaGCGCGa-CGaGGCGCCacu -5'
6853 5' -57.9 NC_001875.2 + 113090 0.73 0.39685
Target:  5'- -cGCGCGUCaGCGCcuuaGCcgCCGUGGUGAg -3'
miRNA:   3'- caUGUGCAG-CGCGa---CGa-GGCGCCACU- -5'
6853 5' -57.9 NC_001875.2 + 12433 0.71 0.515626
Target:  5'- -gGC-CGUUGCG-UGCgcgCCGCGGUGGa -3'
miRNA:   3'- caUGuGCAGCGCgACGa--GGCGCCACU- -5'
6853 5' -57.9 NC_001875.2 + 111799 0.71 0.535231
Target:  5'- gGUGCACGcggccgacggCGCcugGCUGCUCCGCG-UGAc -3'
miRNA:   3'- -CAUGUGCa---------GCG---CGACGAGGCGCcACU- -5'
6853 5' -57.9 NC_001875.2 + 40192 0.69 0.615731
Target:  5'- cGUACGCGUaCGgccaGCUGCUgCGCGGc-- -3'
miRNA:   3'- -CAUGUGCA-GCg---CGACGAgGCGCCacu -5'
6853 5' -57.9 NC_001875.2 + 43643 0.69 0.64631
Target:  5'- uGUACACGUUGUGC-GCgCCGuUGGUGc -3'
miRNA:   3'- -CAUGUGCAGCGCGaCGaGGC-GCCACu -5'
6853 5' -57.9 NC_001875.2 + 6942 0.69 0.64631
Target:  5'- -aACGCGUCGUGCgUGCgCCGCGa--- -3'
miRNA:   3'- caUGUGCAGCGCG-ACGaGGCGCcacu -5'
6853 5' -57.9 NC_001875.2 + 100127 0.69 0.653439
Target:  5'- uUACAUGcUgGCGCUGUUugugucugccgcugUCGCGGUGAu -3'
miRNA:   3'- cAUGUGC-AgCGCGACGA--------------GGCGCCACU- -5'
6853 5' -57.9 NC_001875.2 + 49684 0.68 0.666654
Target:  5'- uUGCACGaaaCGCGCUGgaCCGCGaGuUGGa -3'
miRNA:   3'- cAUGUGCa--GCGCGACgaGGCGC-C-ACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.