miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6858 5' -52 NC_001875.2 + 17195 1.06 0.008285
Target:  5'- aAAAAUAGCACACGCCGUUCGCGAGCGc -3'
miRNA:   3'- -UUUUAUCGUGUGCGGCAAGCGCUCGC- -5'
6858 5' -52 NC_001875.2 + 17129 0.95 0.046625
Target:  5'- aAAAAUAGCACACGCCGUUCGaGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGUGCGGCAAGCgCUCGC- -5'
6858 5' -52 NC_001875.2 + 130047 0.94 0.052232
Target:  5'- aAAAAUAGCACGCGCCGUUCGaGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGUGCGGCAAGCgCUCGC- -5'
6858 5' -52 NC_001875.2 + 130173 0.94 0.052232
Target:  5'- aAAAAUAGCACGCGCCGUUCGaGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGUGCGGCAAGCgCUCGC- -5'
6858 5' -52 NC_001875.2 + 130239 0.94 0.052232
Target:  5'- aAAAAUAGCACGCGCCGUUCGaGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGUGCGGCAAGCgCUCGC- -5'
6858 5' -52 NC_001875.2 + 130305 0.93 0.055276
Target:  5'- aAAAAUAGCACGCGCCGUUCGaGAGCGc -3'
miRNA:   3'- -UUUUAUCGUGUGCGGCAAGCgCUCGC- -5'
6858 5' -52 NC_001875.2 + 130111 0.88 0.120601
Target:  5'- ---cUAGCACACGCCGUUCGaGAGCGu -3'
miRNA:   3'- uuuuAUCGUGUGCGGCAAGCgCUCGC- -5'
6858 5' -52 NC_001875.2 + 130471 0.87 0.134453
Target:  5'- ---cUAGCACGCGCCGUUCGaGAGCGu -3'
miRNA:   3'- uuuuAUCGUGUGCGGCAAGCgCUCGC- -5'
6858 5' -52 NC_001875.2 + 130371 0.83 0.245822
Target:  5'- aAAAGUAGCACGCGCCuUUCGaGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGUGCGGcAAGCgCUCGC- -5'
6858 5' -52 NC_001875.2 + 130533 0.83 0.245822
Target:  5'- aAAAAUAGCACGCGCCuUUCGaGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGUGCGGcAAGCgCUCGC- -5'
6858 5' -52 NC_001875.2 + 101593 0.83 0.245822
Target:  5'- aAAAAUAGCACGCGCCuUUCGaGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGUGCGGcAAGCgCUCGC- -5'
6858 5' -52 NC_001875.2 + 101527 0.83 0.245822
Target:  5'- aAAAAUAGCACGCGCCuUUCGaGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGUGCGGcAAGCgCUCGC- -5'
6858 5' -52 NC_001875.2 + 101263 0.83 0.245822
Target:  5'- aAAAAUAGCACGCGCCuUUCGaGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGUGCGGcAAGCgCUCGC- -5'
6858 5' -52 NC_001875.2 + 101131 0.83 0.245822
Target:  5'- aAAAAUAGCACGCGCCuUUCGaGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGUGCGGcAAGCgCUCGC- -5'
6858 5' -52 NC_001875.2 + 9639 0.79 0.378211
Target:  5'- -----uGCGCGCGCCGUgcguguuUCGCGAGCu -3'
miRNA:   3'- uuuuauCGUGUGCGGCA-------AGCGCUCGc -5'
6858 5' -52 NC_001875.2 + 101461 0.79 0.379072
Target:  5'- aAAAAUAGCACGCGCUuUUCGaGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGUGCGGcAAGCgCUCGC- -5'
6858 5' -52 NC_001875.2 + 101395 0.79 0.379072
Target:  5'- aAAAAUAGCACGCGCUuUUCGaGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGUGCGGcAAGCgCUCGC- -5'
6858 5' -52 NC_001875.2 + 101329 0.79 0.379072
Target:  5'- aAAAAUAGCACGCGCUuUUCGaGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGUGCGGcAAGCgCUCGC- -5'
6858 5' -52 NC_001875.2 + 101197 0.79 0.379072
Target:  5'- aAAAAUAGCACGCGCUuUUCGaGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGUGCGGcAAGCgCUCGC- -5'
6858 5' -52 NC_001875.2 + 17064 0.76 0.521734
Target:  5'- aAAAAUAGCACGCGCU-UUCGaGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGUGCGGcAAGCgCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.