miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6858 5' -52 NC_001875.2 + 2291 0.75 0.627283
Target:  5'- -uGAUGcGCGCGCGCCGUggccgCGCGcAGCu -3'
miRNA:   3'- uuUUAU-CGUGUGCGGCAa----GCGC-UCGc -5'
6858 5' -52 NC_001875.2 + 3030 0.67 0.961502
Target:  5'- cAAGUuGUACACGCCGUUgggcagCGCGuaagaGGCGc -3'
miRNA:   3'- uUUUAuCGUGUGCGGCAA------GCGC-----UCGC- -5'
6858 5' -52 NC_001875.2 + 3097 0.73 0.73302
Target:  5'- -----uGCACGCGCCGgggCGCGGcucGCGg -3'
miRNA:   3'- uuuuauCGUGUGCGGCaa-GCGCU---CGC- -5'
6858 5' -52 NC_001875.2 + 3832 0.7 0.846337
Target:  5'- ----cGGCGCACGCCGg-CGCGGccGCa -3'
miRNA:   3'- uuuuaUCGUGUGCGGCaaGCGCU--CGc -5'
6858 5' -52 NC_001875.2 + 6902 0.67 0.961867
Target:  5'- cAGAAUAGUGCACGagcaccugaccaacaCGUaCGUGAGCa -3'
miRNA:   3'- -UUUUAUCGUGUGCg--------------GCAaGCGCUCGc -5'
6858 5' -52 NC_001875.2 + 7386 0.68 0.935105
Target:  5'- ----cGGC-CACGCgGUUgCGCGAcGCGg -3'
miRNA:   3'- uuuuaUCGuGUGCGgCAA-GCGCU-CGC- -5'
6858 5' -52 NC_001875.2 + 9639 0.79 0.378211
Target:  5'- -----uGCGCGCGCCGUgcguguuUCGCGAGCu -3'
miRNA:   3'- uuuuauCGUGUGCGGCA-------AGCGCUCGc -5'
6858 5' -52 NC_001875.2 + 12856 0.66 0.971405
Target:  5'- ---cUAGCACGCaGCCGUgguuggUCGUGuuGGCa -3'
miRNA:   3'- uuuuAUCGUGUG-CGGCA------AGCGC--UCGc -5'
6858 5' -52 NC_001875.2 + 14553 0.68 0.935105
Target:  5'- ---cUGGCGCACGCgGccaUCGUGaAGCGc -3'
miRNA:   3'- uuuuAUCGUGUGCGgCa--AGCGC-UCGC- -5'
6858 5' -52 NC_001875.2 + 17064 0.76 0.521734
Target:  5'- aAAAAUAGCACGCGCU-UUCGaGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGUGCGGcAAGCgCUCGC- -5'
6858 5' -52 NC_001875.2 + 17129 0.95 0.046625
Target:  5'- aAAAAUAGCACACGCCGUUCGaGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGUGCGGCAAGCgCUCGC- -5'
6858 5' -52 NC_001875.2 + 17195 1.06 0.008285
Target:  5'- aAAAAUAGCACACGCCGUUCGCGAGCGc -3'
miRNA:   3'- -UUUUAUCGUGUGCGGCAAGCGCUCGC- -5'
6858 5' -52 NC_001875.2 + 18268 0.68 0.91842
Target:  5'- ---cUGGCccaaugGCGCGCCGUgCGCGAccGCGc -3'
miRNA:   3'- uuuuAUCG------UGUGCGGCAaGCGCU--CGC- -5'
6858 5' -52 NC_001875.2 + 19875 0.74 0.648704
Target:  5'- ----cGGCGCggGCGCCGUUUGCGAaacGCGu -3'
miRNA:   3'- uuuuaUCGUG--UGCGGCAAGCGCU---CGC- -5'
6858 5' -52 NC_001875.2 + 20647 0.66 0.971405
Target:  5'- aAAAAcGGCGCGCGCCGcccaGCGcGCc -3'
miRNA:   3'- -UUUUaUCGUGUGCGGCaag-CGCuCGc -5'
6858 5' -52 NC_001875.2 + 27817 0.67 0.944922
Target:  5'- ----cGGCAUugGCCGUUgGCG-GUc -3'
miRNA:   3'- uuuuaUCGUGugCGGCAAgCGCuCGc -5'
6858 5' -52 NC_001875.2 + 30456 0.67 0.944922
Target:  5'- ---cUGGCGCGCGuuGcgCGCGuuuGCa -3'
miRNA:   3'- uuuuAUCGUGUGCggCaaGCGCu--CGc -5'
6858 5' -52 NC_001875.2 + 31299 0.66 0.971405
Target:  5'- ---uUAcCACGCGCCGuUUUGCGAcGCa -3'
miRNA:   3'- uuuuAUcGUGUGCGGC-AAGCGCU-CGc -5'
6858 5' -52 NC_001875.2 + 31589 0.67 0.944922
Target:  5'- aAGGGUGGUGuccgGCGCCGUgcCGUGGGCGg -3'
miRNA:   3'- -UUUUAUCGUg---UGCGGCAa-GCGCUCGC- -5'
6858 5' -52 NC_001875.2 + 31980 0.74 0.670067
Target:  5'- --uGUGGCGCGCguacgGCCgGUUUGUGAGCGg -3'
miRNA:   3'- uuuUAUCGUGUG-----CGG-CAAGCGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.