miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6860 3' -52.8 NC_001875.2 + 65752 0.66 0.968375
Target:  5'- gCGGGCcucggcguauucGUGCGCgGCgggcgGCGGCGCgUCGUc -3'
miRNA:   3'- -GCUCG------------UACGUGgCGa----UGUUGUG-AGCA- -5'
6860 3' -52.8 NC_001875.2 + 6930 0.66 0.968375
Target:  5'- aGGGCGUGgACCGCgcgcUACAACAaaacccgcgcCUCa- -3'
miRNA:   3'- gCUCGUACgUGGCG----AUGUUGU----------GAGca -5'
6860 3' -52.8 NC_001875.2 + 118375 0.66 0.968375
Target:  5'- aGAGCGUGCGCaUGC-AgGACgACUUGUu -3'
miRNA:   3'- gCUCGUACGUG-GCGaUgUUG-UGAGCA- -5'
6860 3' -52.8 NC_001875.2 + 79131 0.66 0.968375
Target:  5'- -cGGCggGCGCCGCgGCGG-GCUCGUu -3'
miRNA:   3'- gcUCGuaCGUGGCGaUGUUgUGAGCA- -5'
6860 3' -52.8 NC_001875.2 + 98602 0.66 0.968375
Target:  5'- gGAGCGccGCGCCGaaACGGCGCcCGg -3'
miRNA:   3'- gCUCGUa-CGUGGCgaUGUUGUGaGCa -5'
6860 3' -52.8 NC_001875.2 + 10141 0.66 0.968375
Target:  5'- uCGGGCGUGUuCCGCa--AGCGCggCGUg -3'
miRNA:   3'- -GCUCGUACGuGGCGaugUUGUGa-GCA- -5'
6860 3' -52.8 NC_001875.2 + 122693 0.66 0.968375
Target:  5'- -uGGCGUGCGCCGUg--GACAC-CGa -3'
miRNA:   3'- gcUCGUACGUGGCGaugUUGUGaGCa -5'
6860 3' -52.8 NC_001875.2 + 46621 0.66 0.968375
Target:  5'- uCGA-CAUGCGgCGCUACcGCGCggCGg -3'
miRNA:   3'- -GCUcGUACGUgGCGAUGuUGUGa-GCa -5'
6860 3' -52.8 NC_001875.2 + 99688 0.66 0.968375
Target:  5'- uGAGCAgcgcgucuuCGCCGCcguugagcgcuaUGCGGCGCUCGc -3'
miRNA:   3'- gCUCGUac-------GUGGCG------------AUGUUGUGAGCa -5'
6860 3' -52.8 NC_001875.2 + 86093 0.66 0.968375
Target:  5'- uCGGGCucgGCGCCGCguuUACGGCuucgCGUg -3'
miRNA:   3'- -GCUCGua-CGUGGCG---AUGUUGuga-GCA- -5'
6860 3' -52.8 NC_001875.2 + 59683 0.66 0.968375
Target:  5'- cCGAGCccGCGCCGg-ACA--ACUCGUu -3'
miRNA:   3'- -GCUCGuaCGUGGCgaUGUugUGAGCA- -5'
6860 3' -52.8 NC_001875.2 + 21349 0.66 0.968375
Target:  5'- aCGAGCA-GCGCCGUgugcuugacGCggUACUUGc -3'
miRNA:   3'- -GCUCGUaCGUGGCGa--------UGuuGUGAGCa -5'
6860 3' -52.8 NC_001875.2 + 107828 0.66 0.965112
Target:  5'- cCGAGCccgcgcccgGUGCGCC-UUGCGACGCgcgCGa -3'
miRNA:   3'- -GCUCG---------UACGUGGcGAUGUUGUGa--GCa -5'
6860 3' -52.8 NC_001875.2 + 51936 0.66 0.965112
Target:  5'- -cAGCGUGCGgCGCUACuuugGGCGCgaCGUg -3'
miRNA:   3'- gcUCGUACGUgGCGAUG----UUGUGa-GCA- -5'
6860 3' -52.8 NC_001875.2 + 110173 0.66 0.965112
Target:  5'- uCGGGCG-GCGUCGC-ACuGCGCUCGUc -3'
miRNA:   3'- -GCUCGUaCGUGGCGaUGuUGUGAGCA- -5'
6860 3' -52.8 NC_001875.2 + 124485 0.66 0.961619
Target:  5'- gCGGGCAcUGCACCGCaggcUACAagguGCAUguaCGUc -3'
miRNA:   3'- -GCUCGU-ACGUGGCG----AUGU----UGUGa--GCA- -5'
6860 3' -52.8 NC_001875.2 + 37122 0.66 0.961619
Target:  5'- gCGAGUuguuUGCgACCGCguuugGCAACuACUUGg -3'
miRNA:   3'- -GCUCGu---ACG-UGGCGa----UGUUG-UGAGCa -5'
6860 3' -52.8 NC_001875.2 + 55055 0.66 0.961257
Target:  5'- --uGCAUGUACuuuucgaggauggCGCUGUAGCACUCGg -3'
miRNA:   3'- gcuCGUACGUG-------------GCGAUGUUGUGAGCa -5'
6860 3' -52.8 NC_001875.2 + 13364 0.66 0.960525
Target:  5'- gCGuGCGUGCuaGCCGUUuuccacagcgcgacGCAGCACgCGUa -3'
miRNA:   3'- -GCuCGUACG--UGGCGA--------------UGUUGUGaGCA- -5'
6860 3' -52.8 NC_001875.2 + 68542 0.66 0.957891
Target:  5'- gGAGCAgcgguuUGcCGCCGCggcgGCGGCGgUCGc -3'
miRNA:   3'- gCUCGU------AC-GUGGCGa---UGUUGUgAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.