Results 21 - 40 of 388 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6860 | 5' | -60.1 | NC_001875.2 | + | 84373 | 0.75 | 0.268631 |
Target: 5'- uGCGCGGCcuGCCGGgg-CGGCGUcgguaGCCg -3' miRNA: 3'- -UGUGCCG--CGGCCaaaGCCGCGug---CGG- -5' |
|||||||
6860 | 5' | -60.1 | NC_001875.2 | + | 48515 | 0.75 | 0.262482 |
Target: 5'- uUugGcGCGCCGcc--CGGCGCGCGCCc -3' miRNA: 3'- uGugC-CGCGGCcaaaGCCGCGUGCGG- -5' |
|||||||
6860 | 5' | -60.1 | NC_001875.2 | + | 88235 | 0.77 | 0.188002 |
Target: 5'- -aACGGCGCaag---CGGCGCGCGCCg -3' miRNA: 3'- ugUGCCGCGgccaaaGCCGCGUGCGG- -5' |
|||||||
6860 | 5' | -60.1 | NC_001875.2 | + | 8302 | 0.77 | 0.179022 |
Target: 5'- uGCACGGCcagcaGCgGGUUg-GGUGCACGCCc -3' miRNA: 3'- -UGUGCCG-----CGgCCAAagCCGCGUGCGG- -5' |
|||||||
6860 | 5' | -60.1 | NC_001875.2 | + | 33225 | 0.78 | 0.174677 |
Target: 5'- gGCGCGGgcuCGCCGGgcgccgUUUCGGCGCgGCGCUc -3' miRNA: 3'- -UGUGCC---GCGGCC------AAAGCCGCG-UGCGG- -5' |
|||||||
6860 | 5' | -60.1 | NC_001875.2 | + | 75606 | 0.78 | 0.174677 |
Target: 5'- gGCGuCGGCGuuGGcgUCGGCGUugGCg -3' miRNA: 3'- -UGU-GCCGCggCCaaAGCCGCGugCGg -5' |
|||||||
6860 | 5' | -60.1 | NC_001875.2 | + | 81342 | 0.78 | 0.158222 |
Target: 5'- cGCGCGGCGCgcUGGUgcCGcGCGCACGCg -3' miRNA: 3'- -UGUGCCGCG--GCCAaaGC-CGCGUGCGg -5' |
|||||||
6860 | 5' | -60.1 | NC_001875.2 | + | 49995 | 0.8 | 0.129456 |
Target: 5'- gACGCGGCGCuugucgCGGUUggGGCGCGCGUg -3' miRNA: 3'- -UGUGCCGCG------GCCAAagCCGCGUGCGg -5' |
|||||||
6860 | 5' | -60.1 | NC_001875.2 | + | 49464 | 0.8 | 0.129456 |
Target: 5'- -gACGGCGCCGuGgUUCcGCGCGCGCCc -3' miRNA: 3'- ugUGCCGCGGC-CaAAGcCGCGUGCGG- -5' |
|||||||
6860 | 5' | -60.1 | NC_001875.2 | + | 42698 | 0.82 | 0.083706 |
Target: 5'- cGCGCGGCGCgCGGUUUCguacgcaaGGCGCAC-CCg -3' miRNA: 3'- -UGUGCCGCG-GCCAAAG--------CCGCGUGcGG- -5' |
|||||||
6860 | 5' | -60.1 | NC_001875.2 | + | 37116 | 0.76 | 0.207154 |
Target: 5'- gGCGCGGCGCCGcgc-CGGCGUuuGCGUCu -3' miRNA: 3'- -UGUGCCGCGGCcaaaGCCGCG--UGCGG- -5' |
|||||||
6860 | 5' | -60.1 | NC_001875.2 | + | 44451 | 0.76 | 0.207154 |
Target: 5'- aGCAaGGCGCCG---UCGGCGCaguGCGCCa -3' miRNA: 3'- -UGUgCCGCGGCcaaAGCCGCG---UGCGG- -5' |
|||||||
6860 | 5' | -60.1 | NC_001875.2 | + | 11097 | 0.75 | 0.262482 |
Target: 5'- gACACGGcCGCCGuc-UCGGCGC-CGCa -3' miRNA: 3'- -UGUGCC-GCGGCcaaAGCCGCGuGCGg -5' |
|||||||
6860 | 5' | -60.1 | NC_001875.2 | + | 3819 | 0.75 | 0.256448 |
Target: 5'- cAC-CGGcCGUCG---UCGGCGCACGCCg -3' miRNA: 3'- -UGuGCC-GCGGCcaaAGCCGCGUGCGG- -5' |
|||||||
6860 | 5' | -60.1 | NC_001875.2 | + | 39314 | 0.75 | 0.256448 |
Target: 5'- cACACcGUGCCGGcggCGuGCGCGCGCUg -3' miRNA: 3'- -UGUGcCGCGGCCaaaGC-CGCGUGCGG- -5' |
|||||||
6860 | 5' | -60.1 | NC_001875.2 | + | 95280 | 0.75 | 0.24703 |
Target: 5'- cCGCGuGCGUCGGUaugcacacggggaCGGUGCGCGCCa -3' miRNA: 3'- uGUGC-CGCGGCCAaa-----------GCCGCGUGCGG- -5' |
|||||||
6860 | 5' | -60.1 | NC_001875.2 | + | 131511 | 0.75 | 0.241291 |
Target: 5'- -uGCGGCGCgCGGUgcagCGGCuggaagcggcgcaaaGCGCGCCc -3' miRNA: 3'- ugUGCCGCG-GCCAaa--GCCG---------------CGUGCGG- -5' |
|||||||
6860 | 5' | -60.1 | NC_001875.2 | + | 32784 | 0.76 | 0.22797 |
Target: 5'- cGCGCGGCGUgGGcg--GGCGCcGCGCCg -3' miRNA: 3'- -UGUGCCGCGgCCaaagCCGCG-UGCGG- -5' |
|||||||
6860 | 5' | -60.1 | NC_001875.2 | + | 79116 | 0.76 | 0.22797 |
Target: 5'- cCACGGCGuuGucggCGGCGgGCGCCg -3' miRNA: 3'- uGUGCCGCggCcaaaGCCGCgUGCGG- -5' |
|||||||
6860 | 5' | -60.1 | NC_001875.2 | + | 56446 | 0.76 | 0.22797 |
Target: 5'- gACACGGUgagGCCGGUggCGGggucCGCGCGCg -3' miRNA: 3'- -UGUGCCG---CGGCCAaaGCC----GCGUGCGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home