miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6860 5' -60.1 NC_001875.2 + 84373 0.75 0.268631
Target:  5'- uGCGCGGCcuGCCGGgg-CGGCGUcgguaGCCg -3'
miRNA:   3'- -UGUGCCG--CGGCCaaaGCCGCGug---CGG- -5'
6860 5' -60.1 NC_001875.2 + 79116 0.76 0.22797
Target:  5'- cCACGGCGuuGucggCGGCGgGCGCCg -3'
miRNA:   3'- uGUGCCGCggCcaaaGCCGCgUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 32784 0.76 0.22797
Target:  5'- cGCGCGGCGUgGGcg--GGCGCcGCGCCg -3'
miRNA:   3'- -UGUGCCGCGgCCaaagCCGCG-UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 131511 0.75 0.241291
Target:  5'- -uGCGGCGCgCGGUgcagCGGCuggaagcggcgcaaaGCGCGCCc -3'
miRNA:   3'- ugUGCCGCG-GCCAaa--GCCG---------------CGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 95280 0.75 0.24703
Target:  5'- cCGCGuGCGUCGGUaugcacacggggaCGGUGCGCGCCa -3'
miRNA:   3'- uGUGC-CGCGGCCAaa-----------GCCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 39314 0.75 0.256448
Target:  5'- cACACcGUGCCGGcggCGuGCGCGCGCUg -3'
miRNA:   3'- -UGUGcCGCGGCCaaaGC-CGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 3819 0.75 0.256448
Target:  5'- cAC-CGGcCGUCG---UCGGCGCACGCCg -3'
miRNA:   3'- -UGuGCC-GCGGCcaaAGCCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 11097 0.75 0.262482
Target:  5'- gACACGGcCGCCGuc-UCGGCGC-CGCa -3'
miRNA:   3'- -UGUGCC-GCGGCcaaAGCCGCGuGCGg -5'
6860 5' -60.1 NC_001875.2 + 48515 0.75 0.262482
Target:  5'- uUugGcGCGCCGcc--CGGCGCGCGCCc -3'
miRNA:   3'- uGugC-CGCGGCcaaaGCCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 56446 0.76 0.22797
Target:  5'- gACACGGUgagGCCGGUggCGGggucCGCGCGCg -3'
miRNA:   3'- -UGUGCCG---CGGCCAaaGCC----GCGUGCGg -5'
6860 5' -60.1 NC_001875.2 + 44451 0.76 0.207154
Target:  5'- aGCAaGGCGCCG---UCGGCGCaguGCGCCa -3'
miRNA:   3'- -UGUgCCGCGGCcaaAGCCGCG---UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 37116 0.76 0.207154
Target:  5'- gGCGCGGCGCCGcgc-CGGCGUuuGCGUCu -3'
miRNA:   3'- -UGUGCCGCGGCcaaaGCCGCG--UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 42698 0.82 0.083706
Target:  5'- cGCGCGGCGCgCGGUUUCguacgcaaGGCGCAC-CCg -3'
miRNA:   3'- -UGUGCCGCG-GCCAAAG--------CCGCGUGcGG- -5'
6860 5' -60.1 NC_001875.2 + 49464 0.8 0.129456
Target:  5'- -gACGGCGCCGuGgUUCcGCGCGCGCCc -3'
miRNA:   3'- ugUGCCGCGGC-CaAAGcCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 49995 0.8 0.129456
Target:  5'- gACGCGGCGCuugucgCGGUUggGGCGCGCGUg -3'
miRNA:   3'- -UGUGCCGCG------GCCAAagCCGCGUGCGg -5'
6860 5' -60.1 NC_001875.2 + 81342 0.78 0.158222
Target:  5'- cGCGCGGCGCgcUGGUgcCGcGCGCACGCg -3'
miRNA:   3'- -UGUGCCGCG--GCCAaaGC-CGCGUGCGg -5'
6860 5' -60.1 NC_001875.2 + 75606 0.78 0.174677
Target:  5'- gGCGuCGGCGuuGGcgUCGGCGUugGCg -3'
miRNA:   3'- -UGU-GCCGCggCCaaAGCCGCGugCGg -5'
6860 5' -60.1 NC_001875.2 + 33225 0.78 0.174677
Target:  5'- gGCGCGGgcuCGCCGGgcgccgUUUCGGCGCgGCGCUc -3'
miRNA:   3'- -UGUGCC---GCGGCC------AAAGCCGCG-UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 8302 0.77 0.179022
Target:  5'- uGCACGGCcagcaGCgGGUUg-GGUGCACGCCc -3'
miRNA:   3'- -UGUGCCG-----CGgCCAAagCCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 88235 0.77 0.188002
Target:  5'- -aACGGCGCaag---CGGCGCGCGCCg -3'
miRNA:   3'- ugUGCCGCGgccaaaGCCGCGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.