miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6860 5' -60.1 NC_001875.2 + 10659 0.66 0.712879
Target:  5'- cUugGGCGgCGGacugcacUUGGCGCagGCGCUg -3'
miRNA:   3'- uGugCCGCgGCCaa-----AGCCGCG--UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 4497 0.66 0.693321
Target:  5'- cACACGuuGCGUcugcuccgcugCGGaaagCGGCGCACcGCCg -3'
miRNA:   3'- -UGUGC--CGCG-----------GCCaaa-GCCGCGUG-CGG- -5'
6860 5' -60.1 NC_001875.2 + 98197 0.66 0.693321
Target:  5'- -gACGGCGUCgaGGUgagCGGCuGCAacUGCCc -3'
miRNA:   3'- ugUGCCGCGG--CCAaa-GCCG-CGU--GCGG- -5'
6860 5' -60.1 NC_001875.2 + 42302 0.66 0.693321
Target:  5'- cCGCGGCGCCaaGUacagaUCGaGCGCGC-CCa -3'
miRNA:   3'- uGUGCCGCGGc-CAa----AGC-CGCGUGcGG- -5'
6860 5' -60.1 NC_001875.2 + 79745 0.66 0.703128
Target:  5'- cGCucuuCGGCGCUGGUggCGaGCauGUGCGCa -3'
miRNA:   3'- -UGu---GCCGCGGCCAaaGC-CG--CGUGCGg -5'
6860 5' -60.1 NC_001875.2 + 48835 0.66 0.694304
Target:  5'- cUACGGCGCCGcuucaagcccgcCGGCGacgagcgGCGCCg -3'
miRNA:   3'- uGUGCCGCGGCcaaa--------GCCGCg------UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 30823 0.66 0.712879
Target:  5'- uGCGCGGCgGCaaacaGGUUguuGCGCAaaacCGCCg -3'
miRNA:   3'- -UGUGCCG-CGg----CCAAagcCGCGU----GCGG- -5'
6860 5' -60.1 NC_001875.2 + 40648 0.66 0.741704
Target:  5'- gGCGCGcacGCGCCGGcuguugcgCGGCGaCAUuCCg -3'
miRNA:   3'- -UGUGC---CGCGGCCaaa-----GCCGC-GUGcGG- -5'
6860 5' -60.1 NC_001875.2 + 76721 0.66 0.693321
Target:  5'- cGCGCuGaGCGUCGGUgac-GCGgACGCCg -3'
miRNA:   3'- -UGUG-C-CGCGGCCAaagcCGCgUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 11914 0.66 0.693321
Target:  5'- -gGCGGCGagcaGGUguuuugCGcGCgGCGCGCCg -3'
miRNA:   3'- ugUGCCGCgg--CCAaa----GC-CG-CGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 99398 0.66 0.693321
Target:  5'- -gGCGGCGCCagcgGGUcgCGcaGCGCauuguuggccaGCGCCg -3'
miRNA:   3'- ugUGCCGCGG----CCAaaGC--CGCG-----------UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 7439 0.66 0.693321
Target:  5'- gGCAacUGcGCGCCGGcgauugcggCGGUGUACgGCCg -3'
miRNA:   3'- -UGU--GC-CGCGGCCaaa------GCCGCGUG-CGG- -5'
6860 5' -60.1 NC_001875.2 + 37920 0.66 0.703128
Target:  5'- cCGCGcGUGuuGGacgaGGCGCACGUUa -3'
miRNA:   3'- uGUGC-CGCggCCaaagCCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 6460 0.66 0.69725
Target:  5'- cGCGCGGUGUucgucaGGUcgaUUaCGGCGCccaacgcggagugccGCGCCa -3'
miRNA:   3'- -UGUGCCGCGg-----CCA---AA-GCCGCG---------------UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 69262 0.66 0.712879
Target:  5'- gGCACGG-GCCGGUUaauGCaCACGCa -3'
miRNA:   3'- -UGUGCCgCGGCCAAagcCGcGUGCGg -5'
6860 5' -60.1 NC_001875.2 + 62584 0.66 0.693321
Target:  5'- cCACGGCucgaGCCG----CGGCccaGCGCGCCg -3'
miRNA:   3'- uGUGCCG----CGGCcaaaGCCG---CGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 8493 0.66 0.693321
Target:  5'- cACGCcgGGCGCCGuccGUgUgGGCGcCGCGCa -3'
miRNA:   3'- -UGUG--CCGCGGC---CAaAgCCGC-GUGCGg -5'
6860 5' -60.1 NC_001875.2 + 36577 0.66 0.693321
Target:  5'- cGCGCGGCuGuuGcaaaaugCGGCGCA-GCCg -3'
miRNA:   3'- -UGUGCCG-CggCcaaa---GCCGCGUgCGG- -5'
6860 5' -60.1 NC_001875.2 + 10343 0.66 0.707036
Target:  5'- cCGCGcccgugauucaaauuGCGCCGGgcuaCGGC-CugGCCg -3'
miRNA:   3'- uGUGC---------------CGCGGCCaaa-GCCGcGugCGG- -5'
6860 5' -60.1 NC_001875.2 + 74000 0.66 0.699212
Target:  5'- gGCcCGGCGgaCCGGUacgagagcaccgCGGCGCACaagauuGCCg -3'
miRNA:   3'- -UGuGCCGC--GGCCAaa----------GCCGCGUG------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.