miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6860 5' -60.1 NC_001875.2 + 16080 1.11 0.0008
Target:  5'- cACACGGCGCCGGUUUCGGCGCACGCCg -3'
miRNA:   3'- -UGUGCCGCGGCCAAAGCCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 41451 0.92 0.018451
Target:  5'- cGCACaGGCGCCGGUUgCGGCGCGCGCg -3'
miRNA:   3'- -UGUG-CCGCGGCCAAaGCCGCGUGCGg -5'
6860 5' -60.1 NC_001875.2 + 62352 0.89 0.029104
Target:  5'- gGCGCGGCGCCaGUUUgGGuCGCGCGCCa -3'
miRNA:   3'- -UGUGCCGCGGcCAAAgCC-GCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 98922 0.83 0.081559
Target:  5'- uCGCGGCGCCGGUUgcgCGuGCGCgACGCg -3'
miRNA:   3'- uGUGCCGCGGCCAAa--GC-CGCG-UGCGg -5'
6860 5' -60.1 NC_001875.2 + 42698 0.82 0.083706
Target:  5'- cGCGCGGCGCgCGGUUUCguacgcaaGGCGCAC-CCg -3'
miRNA:   3'- -UGUGCCGCG-GCCAAAG--------CCGCGUGcGG- -5'
6860 5' -60.1 NC_001875.2 + 21955 0.81 0.108331
Target:  5'- uCGCGGCGCgGGgaugggCGGCGCcaGCGCCa -3'
miRNA:   3'- uGUGCCGCGgCCaaa---GCCGCG--UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 111187 0.8 0.116957
Target:  5'- cUugGGCGCgcUGGg--CGGCGCGCGCCg -3'
miRNA:   3'- uGugCCGCG--GCCaaaGCCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 65790 0.8 0.125901
Target:  5'- cGCGCGGCGUCGGcgcgCGGUGCcugcgcgGCGCCa -3'
miRNA:   3'- -UGUGCCGCGGCCaaa-GCCGCG-------UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 49995 0.8 0.129456
Target:  5'- gACGCGGCGCuugucgCGGUUggGGCGCGCGUg -3'
miRNA:   3'- -UGUGCCGCG------GCCAAagCCGCGUGCGg -5'
6860 5' -60.1 NC_001875.2 + 49464 0.8 0.129456
Target:  5'- -gACGGCGCCGuGgUUCcGCGCGCGCCc -3'
miRNA:   3'- ugUGCCGCGGC-CaAAGcCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 61208 0.79 0.135475
Target:  5'- aACGCGGCGCCGucguacaaaugUUCGGgGCAgGCCa -3'
miRNA:   3'- -UGUGCCGCGGCca---------AAGCCgCGUgCGG- -5'
6860 5' -60.1 NC_001875.2 + 79330 0.78 0.154333
Target:  5'- aGCGCGGCGCUGccUUUGGCGC-CGCUg -3'
miRNA:   3'- -UGUGCCGCGGCcaAAGCCGCGuGCGG- -5'
6860 5' -60.1 NC_001875.2 + 128302 0.78 0.154333
Target:  5'- cCACGGCGCCGGUgaCGuGCGCcaaauGCGCa -3'
miRNA:   3'- uGUGCCGCGGCCAaaGC-CGCG-----UGCGg -5'
6860 5' -60.1 NC_001875.2 + 81342 0.78 0.158222
Target:  5'- cGCGCGGCGCgcUGGUgcCGcGCGCACGCg -3'
miRNA:   3'- -UGUGCCGCG--GCCAaaGC-CGCGUGCGg -5'
6860 5' -60.1 NC_001875.2 + 93530 0.78 0.174677
Target:  5'- uGCAUGcCGCCGGccuugUCGGCGCuCGCCa -3'
miRNA:   3'- -UGUGCcGCGGCCaa---AGCCGCGuGCGG- -5'
6860 5' -60.1 NC_001875.2 + 33225 0.78 0.174677
Target:  5'- gGCGCGGgcuCGCCGGgcgccgUUUCGGCGCgGCGCUc -3'
miRNA:   3'- -UGUGCC---GCGGCC------AAAGCCGCG-UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 75606 0.78 0.174677
Target:  5'- gGCGuCGGCGuuGGcgUCGGCGUugGCg -3'
miRNA:   3'- -UGU-GCCGCggCCaaAGCCGCGugCGg -5'
6860 5' -60.1 NC_001875.2 + 8302 0.77 0.179022
Target:  5'- uGCACGGCcagcaGCgGGUUg-GGUGCACGCCc -3'
miRNA:   3'- -UGUGCCG-----CGgCCAAagCCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 88235 0.77 0.188002
Target:  5'- -aACGGCGCaag---CGGCGCGCGCCg -3'
miRNA:   3'- ugUGCCGCGgccaaaGCCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 2663 0.77 0.191237
Target:  5'- -uGCGGCGCCGG---CGGCGCcuggggcaacugcgGCGCCu -3'
miRNA:   3'- ugUGCCGCGGCCaaaGCCGCG--------------UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.