miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6860 5' -60.1 NC_001875.2 + 256 0.68 0.600845
Target:  5'- aGCGCGGCggggucguuguauuGCUGGcgUCGcCGCAUGCUg -3'
miRNA:   3'- -UGUGCCG--------------CGGCCaaAGCcGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 2294 0.68 0.583976
Target:  5'- uGCGCGcGCGCCG----UGGcCGCGCGCa -3'
miRNA:   3'- -UGUGC-CGCGGCcaaaGCC-GCGUGCGg -5'
6860 5' -60.1 NC_001875.2 + 2535 0.67 0.683465
Target:  5'- uACGCcGgGCCGGUgaacaaCGGCGCgucggGCGCa -3'
miRNA:   3'- -UGUGcCgCGGCCAaa----GCCGCG-----UGCGg -5'
6860 5' -60.1 NC_001875.2 + 2663 0.77 0.191237
Target:  5'- -uGCGGCGCCGG---CGGCGCcuggggcaacugcgGCGCCu -3'
miRNA:   3'- ugUGCCGCGGCCaaaGCCGCG--------------UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 3063 0.71 0.41535
Target:  5'- gGCGCGcagcggcGCGCCGGggucgcccaCGGCGUgcacGCGCCg -3'
miRNA:   3'- -UGUGC-------CGCGGCCaaa------GCCGCG----UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 3154 0.75 0.262482
Target:  5'- gACGCGGCGUCGGg--CGGCGaguaggugaGCCg -3'
miRNA:   3'- -UGUGCCGCGGCCaaaGCCGCgug------CGG- -5'
6860 5' -60.1 NC_001875.2 + 3209 0.71 0.424778
Target:  5'- -uGCGGCGgCGGUUggaUGGCGUggGCGCg -3'
miRNA:   3'- ugUGCCGCgGCCAAa--GCCGCG--UGCGg -5'
6860 5' -60.1 NC_001875.2 + 3819 0.75 0.256448
Target:  5'- cAC-CGGcCGUCG---UCGGCGCACGCCg -3'
miRNA:   3'- -UGuGCC-GCGGCcaaAGCCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 4497 0.66 0.693321
Target:  5'- cACACGuuGCGUcugcuccgcugCGGaaagCGGCGCACcGCCg -3'
miRNA:   3'- -UGUGC--CGCG-----------GCCaaa-GCCGCGUG-CGG- -5'
6860 5' -60.1 NC_001875.2 + 5530 0.66 0.693321
Target:  5'- uACGcCGGcCGCCGuuga-GGCGCGCGUUa -3'
miRNA:   3'- -UGU-GCC-GCGGCcaaagCCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 5568 0.68 0.583976
Target:  5'- uCACGGCGacugugCGGUUUUGcGUGuCGCGUCg -3'
miRNA:   3'- uGUGCCGCg-----GCCAAAGC-CGC-GUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 5910 0.69 0.544714
Target:  5'- gUACaGCGCCGGca-UGGCGUuggguaGCGCCg -3'
miRNA:   3'- uGUGcCGCGGCCaaaGCCGCG------UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 6212 0.67 0.643718
Target:  5'- aGCGCGcaauuGCGuCCG---UCGGCGaCACGCCc -3'
miRNA:   3'- -UGUGC-----CGC-GGCcaaAGCCGC-GUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 6460 0.66 0.69725
Target:  5'- cGCGCGGUGUucgucaGGUcgaUUaCGGCGCccaacgcggagugccGCGCCa -3'
miRNA:   3'- -UGUGCCGCGg-----CCA---AA-GCCGCG---------------UGCGG- -5'
6860 5' -60.1 NC_001875.2 + 6684 0.7 0.478344
Target:  5'- aACuuGGCGaCGa---CGGCGCACGCCa -3'
miRNA:   3'- -UGugCCGCgGCcaaaGCCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 6978 0.66 0.741704
Target:  5'- uGCAgGGCgcaaagcgGCCGGUgUgGGUgugcuGCugGCCg -3'
miRNA:   3'- -UGUgCCG--------CGGCCAaAgCCG-----CGugCGG- -5'
6860 5' -60.1 NC_001875.2 + 7049 0.66 0.732176
Target:  5'- cGCuuguCGGC-CUGGUUccgcugCGGCG-ACGCCa -3'
miRNA:   3'- -UGu---GCCGcGGCCAAa-----GCCGCgUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 7439 0.66 0.693321
Target:  5'- gGCAacUGcGCGCCGGcgauugcggCGGUGUACgGCCg -3'
miRNA:   3'- -UGU--GC-CGCGGCCaaa------GCCGCGUG-CGG- -5'
6860 5' -60.1 NC_001875.2 + 8302 0.77 0.179022
Target:  5'- uGCACGGCcagcaGCgGGUUg-GGUGCACGCCc -3'
miRNA:   3'- -UGUGCCG-----CGgCCAAagCCGCGUGCGG- -5'
6860 5' -60.1 NC_001875.2 + 8493 0.66 0.693321
Target:  5'- cACGCcgGGCGCCGuccGUgUgGGCGcCGCGCa -3'
miRNA:   3'- -UGUG--CCGCGGC---CAaAgCCGC-GUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.