miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6863 5' -54.7 NC_001875.2 + 25844 0.66 0.928811
Target:  5'- aGAUGAaGUcGGGGCCaugGCGCAucAAGa -3'
miRNA:   3'- gCUAUUgCGaCCCCGGca-CGCGU--UUC- -5'
6863 5' -54.7 NC_001875.2 + 18251 0.66 0.928276
Target:  5'- cCGAcucgAACGCcgugcuggcccaaUGGcGcGCCGUGCGCGAc- -3'
miRNA:   3'- -GCUa---UUGCG-------------ACC-C-CGGCACGCGUUuc -5'
6863 5' -54.7 NC_001875.2 + 109092 0.66 0.91764
Target:  5'- cCGGUGAugUGCUGGagcggugcguGGCCG-GCGCAcAAGu -3'
miRNA:   3'- -GCUAUU--GCGACC----------CCGGCaCGCGU-UUC- -5'
6863 5' -54.7 NC_001875.2 + 120745 0.66 0.911683
Target:  5'- ---cGGCGCcgagacGGGGCCGUGUcCAGGGc -3'
miRNA:   3'- gcuaUUGCGa-----CCCCGGCACGcGUUUC- -5'
6863 5' -54.7 NC_001875.2 + 75679 0.66 0.911683
Target:  5'- gCGAUGGCGUUGGcGUCG-GCGUcggcGAGGg -3'
miRNA:   3'- -GCUAUUGCGACCcCGGCaCGCG----UUUC- -5'
6863 5' -54.7 NC_001875.2 + 81345 0.66 0.911683
Target:  5'- gCGGc-GCGCUGGuGCCGcGCGCAc-- -3'
miRNA:   3'- -GCUauUGCGACCcCGGCaCGCGUuuc -5'
6863 5' -54.7 NC_001875.2 + 49123 0.67 0.885418
Target:  5'- aGGUAcACcUUGGGcGCUGUGUGUAAAGg -3'
miRNA:   3'- gCUAU-UGcGACCC-CGGCACGCGUUUC- -5'
6863 5' -54.7 NC_001875.2 + 116630 0.67 0.885418
Target:  5'- gCGuuuuUGCUGGGGCCGUacGUGCu--- -3'
miRNA:   3'- -GCuauuGCGACCCCGGCA--CGCGuuuc -5'
6863 5' -54.7 NC_001875.2 + 61724 0.67 0.885418
Target:  5'- cCGAUuuUGUUGucGGCCGgcugcgGCGCAAAGg -3'
miRNA:   3'- -GCUAuuGCGACc-CCGGCa-----CGCGUUUC- -5'
6863 5' -54.7 NC_001875.2 + 75578 0.67 0.87826
Target:  5'- uGAUAGCGCUGGcGUCG-GCGUc--- -3'
miRNA:   3'- gCUAUUGCGACCcCGGCaCGCGuuuc -5'
6863 5' -54.7 NC_001875.2 + 55976 0.68 0.863263
Target:  5'- ---aAAUGCUGuuGGCCGUGCGCu--- -3'
miRNA:   3'- gcuaUUGCGACc-CCGGCACGCGuuuc -5'
6863 5' -54.7 NC_001875.2 + 19710 0.68 0.863263
Target:  5'- aGGUGuacGCGCUGuGGGCCGagGcCGUAAAc -3'
miRNA:   3'- gCUAU---UGCGAC-CCCGGCa-C-GCGUUUc -5'
6863 5' -54.7 NC_001875.2 + 72555 0.68 0.855437
Target:  5'- aCGG--GCGCUGcGGGCgCGgGCGCGGGc -3'
miRNA:   3'- -GCUauUGCGAC-CCCG-GCaCGCGUUUc -5'
6863 5' -54.7 NC_001875.2 + 118922 0.68 0.847401
Target:  5'- aGAagAACGCUGcacauccacGGGCCG-GCGCuAGGg -3'
miRNA:   3'- gCUa-UUGCGAC---------CCCGGCaCGCGuUUC- -5'
6863 5' -54.7 NC_001875.2 + 118456 0.68 0.839162
Target:  5'- ----cGCGcCUGGuGCCGUGCGUAGAa -3'
miRNA:   3'- gcuauUGC-GACCcCGGCACGCGUUUc -5'
6863 5' -54.7 NC_001875.2 + 89506 0.68 0.838327
Target:  5'- gCGAcuGCGCuuccgccUGGGGCCGcuggGCGCGc-- -3'
miRNA:   3'- -GCUauUGCG-------ACCCCGGCa---CGCGUuuc -5'
6863 5' -54.7 NC_001875.2 + 94494 0.68 0.830727
Target:  5'- aCGA--GCGCgc-GGCCGcGCGCAAAGu -3'
miRNA:   3'- -GCUauUGCGaccCCGGCaCGCGUUUC- -5'
6863 5' -54.7 NC_001875.2 + 110645 0.69 0.804328
Target:  5'- uGGUGGCGCU--GGCCGUGcCGCGc-- -3'
miRNA:   3'- gCUAUUGCGAccCCGGCAC-GCGUuuc -5'
6863 5' -54.7 NC_001875.2 + 100068 0.69 0.795192
Target:  5'- aCGGUGcUGCUGGGGCac-GCGCuuGGc -3'
miRNA:   3'- -GCUAUuGCGACCCCGgcaCGCGuuUC- -5'
6863 5' -54.7 NC_001875.2 + 72080 0.69 0.795192
Target:  5'- aCGu---CGUUGGGcGCCGUgguuucGCGCAAAGu -3'
miRNA:   3'- -GCuauuGCGACCC-CGGCA------CGCGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.