miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6864 5' -52 NC_001875.2 + 75423 0.66 0.97487
Target:  5'- gUCGGCGUugGugAuGGCGucgGCGAu-- -3'
miRNA:   3'- -AGCCGCAugUugU-CCGUca-CGCUuuc -5'
6864 5' -52 NC_001875.2 + 82176 0.66 0.97487
Target:  5'- gCGGUacGUGCGcaaccgccGCGGGCAGUacgGCGAGu- -3'
miRNA:   3'- aGCCG--CAUGU--------UGUCCGUCA---CGCUUuc -5'
6864 5' -52 NC_001875.2 + 79677 0.66 0.97487
Target:  5'- gUCGcCGUACAGCAGGCAcu-CGAGGu -3'
miRNA:   3'- -AGCcGCAUGUUGUCCGUcacGCUUUc -5'
6864 5' -52 NC_001875.2 + 75303 0.66 0.97487
Target:  5'- gUCGGCGUugGugAuGGCGucgGCGAu-- -3'
miRNA:   3'- -AGCCGCAugUugU-CCGUca-CGCUuuc -5'
6864 5' -52 NC_001875.2 + 75483 0.66 0.97487
Target:  5'- gUCGGCGUugGugAuGGCGucgGCGAu-- -3'
miRNA:   3'- -AGCCGCAugUugU-CCGUca-CGCUuuc -5'
6864 5' -52 NC_001875.2 + 75453 0.66 0.97487
Target:  5'- gUCGGCGUugGugAuGGCGucgGCGAu-- -3'
miRNA:   3'- -AGCCGCAugUugU-CCGUca-CGCUuuc -5'
6864 5' -52 NC_001875.2 + 86155 0.66 0.972085
Target:  5'- gCGGCGagAUGACGGacGUGGUGCGGGAu -3'
miRNA:   3'- aGCCGCa-UGUUGUC--CGUCACGCUUUc -5'
6864 5' -52 NC_001875.2 + 103319 0.66 0.972085
Target:  5'- cCGGCGUGC--CGGGCGacgcGUGCGcGAc -3'
miRNA:   3'- aGCCGCAUGuuGUCCGU----CACGCuUUc -5'
6864 5' -52 NC_001875.2 + 63444 0.66 0.972085
Target:  5'- uUCGGCGU-CGGCGGcCAGccGCGAGGc -3'
miRNA:   3'- -AGCCGCAuGUUGUCcGUCa-CGCUUUc -5'
6864 5' -52 NC_001875.2 + 73619 0.66 0.972085
Target:  5'- gCGGCG-GCGGCugcGGCGGcUGCGgcGGc -3'
miRNA:   3'- aGCCGCaUGUUGu--CCGUC-ACGCuuUC- -5'
6864 5' -52 NC_001875.2 + 54727 0.66 0.969083
Target:  5'- -gGGCGUG-GACAGGUAgccGUGCGGGc- -3'
miRNA:   3'- agCCGCAUgUUGUCCGU---CACGCUUuc -5'
6864 5' -52 NC_001875.2 + 12464 0.66 0.969083
Target:  5'- uUCaGCG-GCAGCAGaCGGUGCuGAAAGu -3'
miRNA:   3'- -AGcCGCaUGUUGUCcGUCACG-CUUUC- -5'
6864 5' -52 NC_001875.2 + 66114 0.66 0.969083
Target:  5'- gCGGCGgGCGGCgAGGCGGcgccgcccGCGGAAc -3'
miRNA:   3'- aGCCGCaUGUUG-UCCGUCa-------CGCUUUc -5'
6864 5' -52 NC_001875.2 + 38285 0.67 0.965859
Target:  5'- gCGcGCGUACGACGacGCGGUGgCGAGc- -3'
miRNA:   3'- aGC-CGCAUGUUGUc-CGUCAC-GCUUuc -5'
6864 5' -52 NC_001875.2 + 42285 0.67 0.965859
Target:  5'- -aGGUGaACGGCAGGCugcgcGUGCGuauAGa -3'
miRNA:   3'- agCCGCaUGUUGUCCGu----CACGCuu-UC- -5'
6864 5' -52 NC_001875.2 + 8305 0.67 0.962405
Target:  5'- aCGGCcaGCAGCGGGUugGGUGCa---- -3'
miRNA:   3'- aGCCGcaUGUUGUCCG--UCACGcuuuc -5'
6864 5' -52 NC_001875.2 + 92544 0.67 0.962046
Target:  5'- aCGGUGUGCAGCGcgcacuuggugucGGCGG-GCaGAAGc -3'
miRNA:   3'- aGCCGCAUGUUGU-------------CCGUCaCGcUUUC- -5'
6864 5' -52 NC_001875.2 + 129966 0.67 0.958715
Target:  5'- gCGGCGgcgGCGGC-GGCGGcgGCGGc-- -3'
miRNA:   3'- aGCCGCa--UGUUGuCCGUCa-CGCUuuc -5'
6864 5' -52 NC_001875.2 + 103003 0.67 0.954784
Target:  5'- gUGGCGUGCGGCAaGuGCGcUGCGGGc- -3'
miRNA:   3'- aGCCGCAUGUUGU-C-CGUcACGCUUuc -5'
6864 5' -52 NC_001875.2 + 84123 0.67 0.953557
Target:  5'- cCGGCucaaGCAGCAGGCAGUcgugcacuugccccGCGuuGAGa -3'
miRNA:   3'- aGCCGca--UGUUGUCCGUCA--------------CGCu-UUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.