miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
687 5' -52.8 AC_000018.1 + 33225 0.66 0.702689
Target:  5'- cACACUGCCAaCAcc---GCUCCCccaGCCa -3'
miRNA:   3'- -UGUGACGGUcGUuuaacUGAGGG---CGG- -5'
687 5' -52.8 AC_000018.1 + 16192 0.66 0.679691
Target:  5'- cGCGCggcuucaggUGCCAGCAGc--GGCaggUCCCGCa -3'
miRNA:   3'- -UGUG---------ACGGUCGUUuaaCUG---AGGGCGg -5'
687 5' -52.8 AC_000018.1 + 25571 0.67 0.656491
Target:  5'- cCACUGCCGcuGCAAucuUUGcacaccccaccGCUCCCuuGCCu -3'
miRNA:   3'- uGUGACGGU--CGUUu--AAC-----------UGAGGG--CGG- -5'
687 5' -52.8 AC_000018.1 + 21661 0.67 0.633188
Target:  5'- aGCACUgGCUGGCuuuuGGUUGGaaCCCGCg -3'
miRNA:   3'- -UGUGA-CGGUCGu---UUAACUgaGGGCGg -5'
687 5' -52.8 AC_000018.1 + 8522 0.68 0.582034
Target:  5'- cCACUGCCAGCcaugccgccGGgUCCCgaGCCg -3'
miRNA:   3'- uGUGACGGUCGuuuaa----CUgAGGG--CGG- -5'
687 5' -52.8 AC_000018.1 + 17937 0.68 0.563609
Target:  5'- gAUACUGCUccaauugaaGGCGcccccguucAGUUGGCUCgUGCCg -3'
miRNA:   3'- -UGUGACGG---------UCGU---------UUAACUGAGgGCGG- -5'
687 5' -52.8 AC_000018.1 + 16087 0.69 0.518321
Target:  5'- cGCAUcGCCAGgcgccaCAGGgcuACUCCCGCCa -3'
miRNA:   3'- -UGUGaCGGUC------GUUUaacUGAGGGCGG- -5'
687 5' -52.8 AC_000018.1 + 17462 0.7 0.452316
Target:  5'- gACGCUGCCuccuuGCAGAUaUGGCccucacuUgCCGCCu -3'
miRNA:   3'- -UGUGACGGu----CGUUUA-ACUG-------AgGGCGG- -5'
687 5' -52.8 AC_000018.1 + 26934 0.74 0.2816
Target:  5'- -aGgUGCCaagGGUGAcgUGAUUCCCGCCg -3'
miRNA:   3'- ugUgACGG---UCGUUuaACUGAGGGCGG- -5'
687 5' -52.8 AC_000018.1 + 22286 0.81 0.091607
Target:  5'- --cCUGCCcGCGGGUcacuuUGACUCCCGCCa -3'
miRNA:   3'- uguGACGGuCGUUUA-----ACUGAGGGCGG- -5'
687 5' -52.8 AC_000018.1 + 17340 1.13 0.000483
Target:  5'- aACACUGCCAGCAAAUUGACUCCCGCCg -3'
miRNA:   3'- -UGUGACGGUCGUUUAACUGAGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.