miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6879 5' -56.3 NC_001875.2 + 102017 0.66 0.851368
Target:  5'- -gGugGACUGCAGcGuGCCGUugacCCAUGc -3'
miRNA:   3'- aaUugCUGACGUC-C-CGGCGca--GGUAC- -5'
6879 5' -56.3 NC_001875.2 + 60294 0.66 0.84321
Target:  5'- gUUGGCGACacUGCAGGcGaCGCGUCgCAg- -3'
miRNA:   3'- -AAUUGCUG--ACGUCC-CgGCGCAG-GUac -5'
6879 5' -56.3 NC_001875.2 + 23161 0.66 0.825434
Target:  5'- -gGGCGGCUGCGGgcacggcGGCUGCGggcacggCCGUu -3'
miRNA:   3'- aaUUGCUGACGUC-------CCGGCGCa------GGUAc -5'
6879 5' -56.3 NC_001875.2 + 95245 0.66 0.817564
Target:  5'- -gGGCGACgcGCAGcGGCUGCG-CCGc- -3'
miRNA:   3'- aaUUGCUGa-CGUC-CCGGCGCaGGUac -5'
6879 5' -56.3 NC_001875.2 + 93665 0.67 0.799574
Target:  5'- gUUGACGAcCUGCGucGGGCgcuCGCGUUCAc- -3'
miRNA:   3'- -AAUUGCU-GACGU--CCCG---GCGCAGGUac -5'
6879 5' -56.3 NC_001875.2 + 86383 0.68 0.761771
Target:  5'- --cGCGGCUGCGGGcGCCgaGCG-CCGa- -3'
miRNA:   3'- aauUGCUGACGUCC-CGG--CGCaGGUac -5'
6879 5' -56.3 NC_001875.2 + 84375 0.68 0.761771
Target:  5'- --cGCGGcCUGcCGGGGCgGCGUCgGUa -3'
miRNA:   3'- aauUGCU-GAC-GUCCCGgCGCAGgUAc -5'
6879 5' -56.3 NC_001875.2 + 53129 0.68 0.761771
Target:  5'- uUUGACGACgacacGCAcacGGG-CGCGUCCAa- -3'
miRNA:   3'- -AAUUGCUGa----CGU---CCCgGCGCAGGUac -5'
6879 5' -56.3 NC_001875.2 + 39103 0.68 0.751996
Target:  5'- -cAACG-CUGCAGuuCCGCGcUCCAUGg -3'
miRNA:   3'- aaUUGCuGACGUCccGGCGC-AGGUAC- -5'
6879 5' -56.3 NC_001875.2 + 35378 0.68 0.72205
Target:  5'- -gAGCaGCUGgAGGcGCUGCuGUCCGUGg -3'
miRNA:   3'- aaUUGcUGACgUCC-CGGCG-CAGGUAC- -5'
6879 5' -56.3 NC_001875.2 + 32786 0.68 0.711893
Target:  5'- --cGCGGCguggGCGGGcGCCGCG-CCGg- -3'
miRNA:   3'- aauUGCUGa---CGUCC-CGGCGCaGGUac -5'
6879 5' -56.3 NC_001875.2 + 1151 0.69 0.691377
Target:  5'- gUGGCaAaaGUGGGGCCGCGUgCCGUGc -3'
miRNA:   3'- aAUUGcUgaCGUCCCGGCGCA-GGUAC- -5'
6879 5' -56.3 NC_001875.2 + 72509 0.69 0.670655
Target:  5'- aUGugGcACUGCAGccucaCCGUGUCCAUGg -3'
miRNA:   3'- aAUugC-UGACGUCcc---GGCGCAGGUAC- -5'
6879 5' -56.3 NC_001875.2 + 32565 0.69 0.664409
Target:  5'- -gAGCGGCUGCAGcaguGCCGCGcgcaccucgacuagCCGUGg -3'
miRNA:   3'- aaUUGCUGACGUCc---CGGCGCa-------------GGUAC- -5'
6879 5' -56.3 NC_001875.2 + 73623 0.7 0.639348
Target:  5'- -cGGCGGCUGCGGcGGCUGCGgcggCUg-- -3'
miRNA:   3'- aaUUGCUGACGUC-CCGGCGCa---GGuac -5'
6879 5' -56.3 NC_001875.2 + 73653 0.7 0.628889
Target:  5'- -cGGCGGCUGCGGcGGCUGCGgCUg-- -3'
miRNA:   3'- aaUUGCUGACGUC-CCGGCGCaGGuac -5'
6879 5' -56.3 NC_001875.2 + 43552 0.7 0.618432
Target:  5'- uUUGGCGAacgugGCGGGGCgGCGUCUu-- -3'
miRNA:   3'- -AAUUGCUga---CGUCCCGgCGCAGGuac -5'
6879 5' -56.3 NC_001875.2 + 10996 0.71 0.566468
Target:  5'- -aAGCG-CUGCAGGcGCgCGUGcCCAUGg -3'
miRNA:   3'- aaUUGCuGACGUCC-CG-GCGCaGGUAC- -5'
6879 5' -56.3 NC_001875.2 + 16002 0.71 0.545969
Target:  5'- uUUGAcCGGCUGCuGGGCCGCGaggUCAa- -3'
miRNA:   3'- -AAUU-GCUGACGuCCCGGCGCa--GGUac -5'
6879 5' -56.3 NC_001875.2 + 26220 0.71 0.535807
Target:  5'- -cGGCGAC--CAGGGCCGCGUaCCGg- -3'
miRNA:   3'- aaUUGCUGacGUCCCGGCGCA-GGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.