Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6881 | 5' | -55.3 | NC_001875.2 | + | 1762 | 1.11 | 0.002137 |
Target: 5'- cGUCGGCGGAUGUGACCACGAGCAUGCc -3' miRNA: 3'- -CAGCCGCCUACACUGGUGCUCGUACG- -5' |
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6881 | 5' | -55.3 | NC_001875.2 | + | 1810 | 1.11 | 0.002137 |
Target: 5'- cGUCGGCGGAUGUGACCACGAGCAUGCc -3' miRNA: 3'- -CAGCCGCCUACACUGGUGCUCGUACG- -5' |
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6881 | 5' | -55.3 | NC_001875.2 | + | 1851 | 0.76 | 0.372591 |
Target: 5'- -aUGGUaGAUuUGGCCACGAGCAUGCc -3' miRNA: 3'- caGCCGcCUAcACUGGUGCUCGUACG- -5' |
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6881 | 5' | -55.3 | NC_001875.2 | + | 1902 | 0.76 | 0.372591 |
Target: 5'- -aUGGUaGAUuUGGCCACGAGCAUGCc -3' miRNA: 3'- caGCCGcCUAcACUGGUGCUCGUACG- -5' |
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6881 | 5' | -55.3 | NC_001875.2 | + | 84452 | 0.74 | 0.470394 |
Target: 5'- -gCGGCGGcgGUaGACCAUGAugcGCGUGUu -3' miRNA: 3'- caGCCGCCuaCA-CUGGUGCU---CGUACG- -5' |
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6881 | 5' | -55.3 | NC_001875.2 | + | 129972 | 0.72 | 0.579661 |
Target: 5'- -gCGGCGGcgGcGGCgGCG-GCAUGCu -3' miRNA: 3'- caGCCGCCuaCaCUGgUGCuCGUACG- -5' |
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6881 | 5' | -55.3 | NC_001875.2 | + | 102009 | 0.72 | 0.579661 |
Target: 5'- -gCGGCGGcgGUgGACUGC-AGCGUGCc -3' miRNA: 3'- caGCCGCCuaCA-CUGGUGcUCGUACG- -5' |
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6881 | 5' | -55.3 | NC_001875.2 | + | 65437 | 0.72 | 0.604402 |
Target: 5'- cGUCGGCGGAcaucuucaacuacauUGcgcagcUGGCCACGcAGCAagGCa -3' miRNA: 3'- -CAGCCGCCU---------------AC------ACUGGUGC-UCGUa-CG- -5' |
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6881 | 5' | -55.3 | NC_001875.2 | + | 59567 | 0.72 | 0.624081 |
Target: 5'- uUCGGUGGAUGUGuugcgcugcagcgugGCCgacgugcGCGAGCAcggGCg -3' miRNA: 3'- cAGCCGCCUACAC---------------UGG-------UGCUCGUa--CG- -5' |
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6881 | 5' | -55.3 | NC_001875.2 | + | 79125 | 0.71 | 0.63134 |
Target: 5'- uGUCGGCGGcgGgcGCCGCG-GCggGCu -3' miRNA: 3'- -CAGCCGCCuaCacUGGUGCuCGuaCG- -5' |
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6881 | 5' | -55.3 | NC_001875.2 | + | 127985 | 0.71 | 0.662415 |
Target: 5'- -gCGGCGGAucgucacaUGUuggaggcugcGGCCGCGccGGCGUGCg -3' miRNA: 3'- caGCCGCCU--------ACA----------CUGGUGC--UCGUACG- -5' |
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6881 | 5' | -55.3 | NC_001875.2 | + | 113609 | 0.71 | 0.672735 |
Target: 5'- aGUCGGCGGcg--GGCCGCG-GCG-GCa -3' miRNA: 3'- -CAGCCGCCuacaCUGGUGCuCGUaCG- -5' |
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6881 | 5' | -55.3 | NC_001875.2 | + | 130059 | 0.7 | 0.703455 |
Target: 5'- -aUGGCGGcgGcGGCgGCG-GCAUGCu -3' miRNA: 3'- caGCCGCCuaCaCUGgUGCuCGUACG- -5' |
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6881 | 5' | -55.3 | NC_001875.2 | + | 86118 | 0.7 | 0.713584 |
Target: 5'- uUCGcGUGGAcGUGGCCAUcGGCAgUGCg -3' miRNA: 3'- cAGC-CGCCUaCACUGGUGcUCGU-ACG- -5' |
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6881 | 5' | -55.3 | NC_001875.2 | + | 43526 | 0.69 | 0.753291 |
Target: 5'- cGUCGGUGGAcGUGACgACc-GCgGUGCg -3' miRNA: 3'- -CAGCCGCCUaCACUGgUGcuCG-UACG- -5' |
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6881 | 5' | -55.3 | NC_001875.2 | + | 11992 | 0.69 | 0.791246 |
Target: 5'- cGUUGggcGCGGGUGUGGugGCGAGCGcgGCc -3' miRNA: 3'- -CAGC---CGCCUACACUggUGCUCGUa-CG- -5' |
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6881 | 5' | -55.3 | NC_001875.2 | + | 16225 | 0.68 | 0.797662 |
Target: 5'- aGUCgGGCGaGUGUGACUgcgGCGAcgaggccgucacgcGCGUGCg -3' miRNA: 3'- -CAG-CCGCcUACACUGG---UGCU--------------CGUACG- -5' |
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6881 | 5' | -55.3 | NC_001875.2 | + | 46893 | 0.68 | 0.800389 |
Target: 5'- -aCGGUGGAUGUGAUCGC-AGUucguucGCg -3' miRNA: 3'- caGCCGCCUACACUGGUGcUCGua----CG- -5' |
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6881 | 5' | -55.3 | NC_001875.2 | + | 47340 | 0.68 | 0.818199 |
Target: 5'- uGUCGGCGGcgGccaaUGACCuaauuGCGUGUg -3' miRNA: 3'- -CAGCCGCCuaC----ACUGGugcu-CGUACG- -5' |
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6881 | 5' | -55.3 | NC_001875.2 | + | 117373 | 0.68 | 0.826848 |
Target: 5'- cGUCGG-GGAggcgccgagcuUGcUGGCCGCGGGCuucuuUGCc -3' miRNA: 3'- -CAGCCgCCU-----------AC-ACUGGUGCUCGu----ACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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