miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6881 5' -55.3 NC_001875.2 + 1762 1.11 0.002137
Target:  5'- cGUCGGCGGAUGUGACCACGAGCAUGCc -3'
miRNA:   3'- -CAGCCGCCUACACUGGUGCUCGUACG- -5'
6881 5' -55.3 NC_001875.2 + 39670 0.66 0.920322
Target:  5'- -cCGGCGGcgcGcGGCgGCGAGC-UGCu -3'
miRNA:   3'- caGCCGCCua-CaCUGgUGCUCGuACG- -5'
6881 5' -55.3 NC_001875.2 + 15804 0.66 0.920322
Target:  5'- gGUgGGCGGGUacUGcACCACcaacAGCGUGCc -3'
miRNA:   3'- -CAgCCGCCUAc-AC-UGGUGc---UCGUACG- -5'
6881 5' -55.3 NC_001875.2 + 39818 0.66 0.910309
Target:  5'- cGUCGGCGGccgacuuuggcacgGUGUGcCaCACGcugaucggguauuGCGUGCg -3'
miRNA:   3'- -CAGCCGCC--------------UACACuG-GUGCu------------CGUACG- -5'
6881 5' -55.3 NC_001875.2 + 104970 0.66 0.888885
Target:  5'- -gCGGCGGcgGgcugGugCACG-GCAUcaGCa -3'
miRNA:   3'- caGCCGCCuaCa---CugGUGCuCGUA--CG- -5'
6881 5' -55.3 NC_001875.2 + 82174 0.66 0.888195
Target:  5'- --gGGCGGuacGUGcgcaaccGCCGCGGGCAguacgGCg -3'
miRNA:   3'- cagCCGCCua-CAC-------UGGUGCUCGUa----CG- -5'
6881 5' -55.3 NC_001875.2 + 82049 0.67 0.874662
Target:  5'- -gCGGCGGGcugagcggaaUGcUGGCCGgGGGCuuUGCg -3'
miRNA:   3'- caGCCGCCU----------AC-ACUGGUgCUCGu-ACG- -5'
6881 5' -55.3 NC_001875.2 + 117373 0.68 0.826848
Target:  5'- cGUCGG-GGAggcgccgagcuUGcUGGCCGCGGGCuucuuUGCc -3'
miRNA:   3'- -CAGCCgCCU-----------AC-ACUGGUGCUCGu----ACG- -5'
6881 5' -55.3 NC_001875.2 + 47340 0.68 0.818199
Target:  5'- uGUCGGCGGcgGccaaUGACCuaauuGCGUGUg -3'
miRNA:   3'- -CAGCCGCCuaC----ACUGGugcu-CGUACG- -5'
6881 5' -55.3 NC_001875.2 + 16225 0.68 0.797662
Target:  5'- aGUCgGGCGaGUGUGACUgcgGCGAcgaggccgucacgcGCGUGCg -3'
miRNA:   3'- -CAG-CCGCcUACACUGG---UGCU--------------CGUACG- -5'
6881 5' -55.3 NC_001875.2 + 11992 0.69 0.791246
Target:  5'- cGUUGggcGCGGGUGUGGugGCGAGCGcgGCc -3'
miRNA:   3'- -CAGC---CGCCUACACUggUGCUCGUa-CG- -5'
6881 5' -55.3 NC_001875.2 + 1810 1.11 0.002137
Target:  5'- cGUCGGCGGAUGUGACCACGAGCAUGCc -3'
miRNA:   3'- -CAGCCGCCUACACUGGUGCUCGUACG- -5'
6881 5' -55.3 NC_001875.2 + 1851 0.76 0.372591
Target:  5'- -aUGGUaGAUuUGGCCACGAGCAUGCc -3'
miRNA:   3'- caGCCGcCUAcACUGGUGCUCGUACG- -5'
6881 5' -55.3 NC_001875.2 + 1902 0.76 0.372591
Target:  5'- -aUGGUaGAUuUGGCCACGAGCAUGCc -3'
miRNA:   3'- caGCCGcCUAcACUGGUGCUCGUACG- -5'
6881 5' -55.3 NC_001875.2 + 84452 0.74 0.470394
Target:  5'- -gCGGCGGcgGUaGACCAUGAugcGCGUGUu -3'
miRNA:   3'- caGCCGCCuaCA-CUGGUGCU---CGUACG- -5'
6881 5' -55.3 NC_001875.2 + 79125 0.71 0.63134
Target:  5'- uGUCGGCGGcgGgcGCCGCG-GCggGCu -3'
miRNA:   3'- -CAGCCGCCuaCacUGGUGCuCGuaCG- -5'
6881 5' -55.3 NC_001875.2 + 113609 0.71 0.672735
Target:  5'- aGUCGGCGGcg--GGCCGCG-GCG-GCa -3'
miRNA:   3'- -CAGCCGCCuacaCUGGUGCuCGUaCG- -5'
6881 5' -55.3 NC_001875.2 + 43526 0.69 0.753291
Target:  5'- cGUCGGUGGAcGUGACgACc-GCgGUGCg -3'
miRNA:   3'- -CAGCCGCCUaCACUGgUGcuCG-UACG- -5'
6881 5' -55.3 NC_001875.2 + 121667 0.66 0.920322
Target:  5'- uGUCGGCGGugacgGUGgucucgucggccACCACGccGCGcuUGCg -3'
miRNA:   3'- -CAGCCGCCua---CAC------------UGGUGCu-CGU--ACG- -5'
6881 5' -55.3 NC_001875.2 + 129972 0.72 0.579661
Target:  5'- -gCGGCGGcgGcGGCgGCG-GCAUGCu -3'
miRNA:   3'- caGCCGCCuaCaCUGgUGCuCGUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.