miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6885 3' -49.2 NC_001875.2 + 6253 1.12 0.008549
Target:  5'- aCCAUGUAGCGACACACUAAGUACCCGc -3'
miRNA:   3'- -GGUACAUCGCUGUGUGAUUCAUGGGC- -5'
6885 3' -49.2 NC_001875.2 + 84316 0.78 0.664183
Target:  5'- ---aGUAGCGGCGC-CUGcGGUACCCGg -3'
miRNA:   3'- gguaCAUCGCUGUGuGAU-UCAUGGGC- -5'
6885 3' -49.2 NC_001875.2 + 10405 0.72 0.932576
Target:  5'- gCCGUGgcGCGGCACccGCUGcacUACCCa -3'
miRNA:   3'- -GGUACauCGCUGUG--UGAUuc-AUGGGc -5'
6885 3' -49.2 NC_001875.2 + 30217 0.71 0.942666
Target:  5'- gCCGuUGUGGCGAC-CACUuuGUACgUGg -3'
miRNA:   3'- -GGU-ACAUCGCUGuGUGAuuCAUGgGC- -5'
6885 3' -49.2 NC_001875.2 + 116026 0.7 0.95976
Target:  5'- ------cGCGGCACGCUGuugguggugcAGUACCCGc -3'
miRNA:   3'- gguacauCGCUGUGUGAU----------UCAUGGGC- -5'
6885 3' -49.2 NC_001875.2 + 70193 0.7 0.966827
Target:  5'- gCCggGcGGCGACGgcgacCACUGGGcGCCCGa -3'
miRNA:   3'- -GGuaCaUCGCUGU-----GUGAUUCaUGGGC- -5'
6885 3' -49.2 NC_001875.2 + 125851 0.7 0.97001
Target:  5'- cCCAUucGGC-ACGCGCUGGGccUGCCCGu -3'
miRNA:   3'- -GGUAcaUCGcUGUGUGAUUC--AUGGGC- -5'
6885 3' -49.2 NC_001875.2 + 68105 0.7 0.972968
Target:  5'- aCAUG-AGCGACGCcgGCgAAGcGCCCGc -3'
miRNA:   3'- gGUACaUCGCUGUG--UGaUUCaUGGGC- -5'
6885 3' -49.2 NC_001875.2 + 42754 0.7 0.972968
Target:  5'- gCAUGgugAGCGGCGCGCUcGGgucgGCCg- -3'
miRNA:   3'- gGUACa--UCGCUGUGUGAuUCa---UGGgc -5'
6885 3' -49.2 NC_001875.2 + 81335 0.69 0.97571
Target:  5'- aUCGUGccgcGCGGCGCGCU-GGUGCCgCGc -3'
miRNA:   3'- -GGUACau--CGCUGUGUGAuUCAUGG-GC- -5'
6885 3' -49.2 NC_001875.2 + 33918 0.69 0.984672
Target:  5'- -gGUGcAGCGACACG-UGAGgugGCCCa -3'
miRNA:   3'- ggUACaUCGCUGUGUgAUUCa--UGGGc -5'
6885 3' -49.2 NC_001875.2 + 108962 0.68 0.986456
Target:  5'- gCCGUGUgcgauAGCGAUGCGCUGcagcacGGUGUCCa -3'
miRNA:   3'- -GGUACA-----UCGCUGUGUGAU------UCAUGGGc -5'
6885 3' -49.2 NC_001875.2 + 53486 0.68 0.986456
Target:  5'- cCCAUgGUGGUgGACGCGCUcAAGgACUCGg -3'
miRNA:   3'- -GGUA-CAUCG-CUGUGUGA-UUCaUGGGC- -5'
6885 3' -49.2 NC_001875.2 + 43310 0.68 0.986625
Target:  5'- ---gGUAGCGGCGCGCgcgcgggucggcguGGUugCCGc -3'
miRNA:   3'- gguaCAUCGCUGUGUGau------------UCAugGGC- -5'
6885 3' -49.2 NC_001875.2 + 113876 0.68 0.988076
Target:  5'- uCCAgaGUGGgGACGCGCUGGcUGgCCGg -3'
miRNA:   3'- -GGUa-CAUCgCUGUGUGAUUcAUgGGC- -5'
6885 3' -49.2 NC_001875.2 + 34344 0.68 0.989542
Target:  5'- uCUAUG-AGCGGCACAUUGccGGUAUCa- -3'
miRNA:   3'- -GGUACaUCGCUGUGUGAU--UCAUGGgc -5'
6885 3' -49.2 NC_001875.2 + 90044 0.68 0.989542
Target:  5'- gCCAUGUuGCaGCACuACaacGAGUGCCUGg -3'
miRNA:   3'- -GGUACAuCGcUGUG-UGa--UUCAUGGGC- -5'
6885 3' -49.2 NC_001875.2 + 98896 0.68 0.991937
Target:  5'- aCAUGgcgAGCGGCGCgcaaACUGacgcgcucacgcaAGUGCUCGa -3'
miRNA:   3'- gGUACa--UCGCUGUG----UGAU-------------UCAUGGGC- -5'
6885 3' -49.2 NC_001875.2 + 102411 0.67 0.99311
Target:  5'- aCGUGUcGGCGuCGCGCUcgccGUugCCGa -3'
miRNA:   3'- gGUACA-UCGCuGUGUGAuu--CAugGGC- -5'
6885 3' -49.2 NC_001875.2 + 69015 0.67 0.994054
Target:  5'- gCAcGUGGUGGCGCGCUGc---CCCGa -3'
miRNA:   3'- gGUaCAUCGCUGUGUGAUucauGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.