Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6885 | 3' | -49.2 | NC_001875.2 | + | 6253 | 1.12 | 0.008549 |
Target: 5'- aCCAUGUAGCGACACACUAAGUACCCGc -3' miRNA: 3'- -GGUACAUCGCUGUGUGAUUCAUGGGC- -5' |
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6885 | 3' | -49.2 | NC_001875.2 | + | 104963 | 0.66 | 0.998455 |
Target: 5'- cUCGUGUgcGGCGGCGgGCU-GGUGCaCGg -3' miRNA: 3'- -GGUACA--UCGCUGUgUGAuUCAUGgGC- -5' |
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6885 | 3' | -49.2 | NC_001875.2 | + | 27190 | 0.66 | 0.998455 |
Target: 5'- aCCGUcagGUGGC-ACGCGCUAGGaucgGCCUu -3' miRNA: 3'- -GGUA---CAUCGcUGUGUGAUUCa---UGGGc -5' |
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6885 | 3' | -49.2 | NC_001875.2 | + | 62377 | 0.66 | 0.998139 |
Target: 5'- gCCAggGaGGuCGACAUGCUGAGUcGCCgCGg -3' miRNA: 3'- -GGUa-CaUC-GCUGUGUGAUUCA-UGG-GC- -5' |
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6885 | 3' | -49.2 | NC_001875.2 | + | 39878 | 0.66 | 0.996848 |
Target: 5'- aCAgcccgGGCGACGCGCUGcaccauaGCCCGg -3' miRNA: 3'- gGUaca--UCGCUGUGUGAUuca----UGGGC- -5' |
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6885 | 3' | -49.2 | NC_001875.2 | + | 69215 | 0.66 | 0.996795 |
Target: 5'- gCCAguacgcuUGUucgGGCGACGCGCgcuGUGCCg- -3' miRNA: 3'- -GGU-------ACA---UCGCUGUGUGauuCAUGGgc -5' |
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6885 | 3' | -49.2 | NC_001875.2 | + | 69015 | 0.67 | 0.994054 |
Target: 5'- gCAcGUGGUGGCGCGCUGc---CCCGa -3' miRNA: 3'- gGUaCAUCGCUGUGUGAUucauGGGC- -5' |
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6885 | 3' | -49.2 | NC_001875.2 | + | 102411 | 0.67 | 0.99311 |
Target: 5'- aCGUGUcGGCGuCGCGCUcgccGUugCCGa -3' miRNA: 3'- gGUACA-UCGCuGUGUGAuu--CAugGGC- -5' |
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6885 | 3' | -49.2 | NC_001875.2 | + | 98896 | 0.68 | 0.991937 |
Target: 5'- aCAUGgcgAGCGGCGCgcaaACUGacgcgcucacgcaAGUGCUCGa -3' miRNA: 3'- gGUACa--UCGCUGUG----UGAU-------------UCAUGGGC- -5' |
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6885 | 3' | -49.2 | NC_001875.2 | + | 90044 | 0.68 | 0.989542 |
Target: 5'- gCCAUGUuGCaGCACuACaacGAGUGCCUGg -3' miRNA: 3'- -GGUACAuCGcUGUG-UGa--UUCAUGGGC- -5' |
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6885 | 3' | -49.2 | NC_001875.2 | + | 43310 | 0.68 | 0.986625 |
Target: 5'- ---gGUAGCGGCGCGCgcgcgggucggcguGGUugCCGc -3' miRNA: 3'- gguaCAUCGCUGUGUGau------------UCAugGGC- -5' |
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6885 | 3' | -49.2 | NC_001875.2 | + | 84316 | 0.78 | 0.664183 |
Target: 5'- ---aGUAGCGGCGC-CUGcGGUACCCGg -3' miRNA: 3'- gguaCAUCGCUGUGuGAU-UCAUGGGC- -5' |
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6885 | 3' | -49.2 | NC_001875.2 | + | 10405 | 0.72 | 0.932576 |
Target: 5'- gCCGUGgcGCGGCACccGCUGcacUACCCa -3' miRNA: 3'- -GGUACauCGCUGUG--UGAUuc-AUGGGc -5' |
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6885 | 3' | -49.2 | NC_001875.2 | + | 30217 | 0.71 | 0.942666 |
Target: 5'- gCCGuUGUGGCGAC-CACUuuGUACgUGg -3' miRNA: 3'- -GGU-ACAUCGCUGuGUGAuuCAUGgGC- -5' |
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6885 | 3' | -49.2 | NC_001875.2 | + | 70193 | 0.7 | 0.966827 |
Target: 5'- gCCggGcGGCGACGgcgacCACUGGGcGCCCGa -3' miRNA: 3'- -GGuaCaUCGCUGU-----GUGAUUCaUGGGC- -5' |
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6885 | 3' | -49.2 | NC_001875.2 | + | 42754 | 0.7 | 0.972968 |
Target: 5'- gCAUGgugAGCGGCGCGCUcGGgucgGCCg- -3' miRNA: 3'- gGUACa--UCGCUGUGUGAuUCa---UGGgc -5' |
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6885 | 3' | -49.2 | NC_001875.2 | + | 81335 | 0.69 | 0.97571 |
Target: 5'- aUCGUGccgcGCGGCGCGCU-GGUGCCgCGc -3' miRNA: 3'- -GGUACau--CGCUGUGUGAuUCAUGG-GC- -5' |
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6885 | 3' | -49.2 | NC_001875.2 | + | 33918 | 0.69 | 0.984672 |
Target: 5'- -gGUGcAGCGACACG-UGAGgugGCCCa -3' miRNA: 3'- ggUACaUCGCUGUGUgAUUCa--UGGGc -5' |
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6885 | 3' | -49.2 | NC_001875.2 | + | 109134 | 0.66 | 0.998455 |
Target: 5'- gCCAcaGUGGCGACG-ACUAGGgcgAgCCGa -3' miRNA: 3'- -GGUa-CAUCGCUGUgUGAUUCa--UgGGC- -5' |
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6885 | 3' | -49.2 | NC_001875.2 | + | 125851 | 0.7 | 0.97001 |
Target: 5'- cCCAUucGGC-ACGCGCUGGGccUGCCCGu -3' miRNA: 3'- -GGUAcaUCGcUGUGUGAUUC--AUGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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