miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6902 3' -65.3 NC_001875.2 + 23088 1.05 0.000641
Target:  5'- cAACCCGCGCCGCGUGCAGCUGCCCCGc -3'
miRNA:   3'- -UUGGGCGCGGCGCACGUCGACGGGGC- -5'
6902 3' -65.3 NC_001875.2 + 131071 0.77 0.075935
Target:  5'- -uCCgCGCGCCGcCGU-CAGCUGCCCCa -3'
miRNA:   3'- uuGG-GCGCGGC-GCAcGUCGACGGGGc -5'
6902 3' -65.3 NC_001875.2 + 65810 0.74 0.119972
Target:  5'- uGCCUGCGCgGCGccaagcgcuUGCAGCUGCUCUa -3'
miRNA:   3'- uUGGGCGCGgCGC---------ACGUCGACGGGGc -5'
6902 3' -65.3 NC_001875.2 + 66106 0.74 0.129317
Target:  5'- aGGCCCGCGCgGCGggcggcgagGCGGCgccGCCCgCGg -3'
miRNA:   3'- -UUGGGCGCGgCGCa--------CGUCGa--CGGG-GC- -5'
6902 3' -65.3 NC_001875.2 + 110268 0.74 0.132578
Target:  5'- gGGCCgGCugGCCGCGgagcGCgcgGGCUGCCCCGu -3'
miRNA:   3'- -UUGGgCG--CGGCGCa---CG---UCGACGGGGC- -5'
6902 3' -65.3 NC_001875.2 + 128696 0.73 0.13933
Target:  5'- cGCCCGaCGCCGCGUccgcGCAGCggGCUUCGc -3'
miRNA:   3'- uUGGGC-GCGGCGCA----CGUCGa-CGGGGC- -5'
6902 3' -65.3 NC_001875.2 + 90398 0.73 0.142823
Target:  5'- cAACCgGCGCCugugcGCGcGCAGCgGCCCCu -3'
miRNA:   3'- -UUGGgCGCGG-----CGCaCGUCGaCGGGGc -5'
6902 3' -65.3 NC_001875.2 + 17045 0.73 0.153787
Target:  5'- gGAgCCGCGCaacaaCGCGaGCAGCUGCCCg- -3'
miRNA:   3'- -UUgGGCGCG-----GCGCaCGUCGACGGGgc -5'
6902 3' -65.3 NC_001875.2 + 121398 0.73 0.153787
Target:  5'- --gCCGCGCCGCGUcaaaGCuGCUGCgCCa -3'
miRNA:   3'- uugGGCGCGGCGCA----CGuCGACGgGGc -5'
6902 3' -65.3 NC_001875.2 + 59283 0.73 0.157609
Target:  5'- cGCCCGCGcCCGCGcccGCAGC-GCCCg- -3'
miRNA:   3'- uUGGGCGC-GGCGCa--CGUCGaCGGGgc -5'
6902 3' -65.3 NC_001875.2 + 98630 0.73 0.161515
Target:  5'- gAGCCCGCGcCCGCGUuugccgGCAGCgagGCgCUGg -3'
miRNA:   3'- -UUGGGCGC-GGCGCA------CGUCGa--CGgGGC- -5'
6902 3' -65.3 NC_001875.2 + 122066 0.72 0.165509
Target:  5'- uGCCCggauGUGCCGCGUGC-GCUugGCCUCGg -3'
miRNA:   3'- uUGGG----CGCGGCGCACGuCGA--CGGGGC- -5'
6902 3' -65.3 NC_001875.2 + 111980 0.71 0.191379
Target:  5'- cGCCCGCGCCGCGacGCGGCcgaGUCuuGc -3'
miRNA:   3'- uUGGGCGCGGCGCa-CGUCGa--CGGggC- -5'
6902 3' -65.3 NC_001875.2 + 4897 0.71 0.196021
Target:  5'- uAACUCGCGCCGC----AGCUGCuCCCGg -3'
miRNA:   3'- -UUGGGCGCGGCGcacgUCGACG-GGGC- -5'
6902 3' -65.3 NC_001875.2 + 36819 0.71 0.200761
Target:  5'- ---aCGCGCCGCG-GCAGUUGCgcgCCCGc -3'
miRNA:   3'- uuggGCGCGGCGCaCGUCGACG---GGGC- -5'
6902 3' -65.3 NC_001875.2 + 15347 0.71 0.200761
Target:  5'- aAGCCCGaacaaCGCCGCGUGCAGCacuaGCUgCa -3'
miRNA:   3'- -UUGGGC-----GCGGCGCACGUCGa---CGGgGc -5'
6902 3' -65.3 NC_001875.2 + 108675 0.71 0.205601
Target:  5'- uGCCCGCaGCCGcCGUGCccgcAGCcGCCCUu -3'
miRNA:   3'- uUGGGCG-CGGC-GCACG----UCGaCGGGGc -5'
6902 3' -65.3 NC_001875.2 + 102761 0.71 0.210541
Target:  5'- gAACCCgacgacGCGCCGUG-GCAGCaacacGCCCCu -3'
miRNA:   3'- -UUGGG------CGCGGCGCaCGUCGa----CGGGGc -5'
6902 3' -65.3 NC_001875.2 + 37377 0.71 0.210541
Target:  5'- cGCgCGCGCCGC-UGCAguuuccGCUGCCgCCGu -3'
miRNA:   3'- uUGgGCGCGGCGcACGU------CGACGG-GGC- -5'
6902 3' -65.3 NC_001875.2 + 18481 0.71 0.215583
Target:  5'- uGCgCCGCGCCGCagcgacGCAGCcGCgCCCGa -3'
miRNA:   3'- uUG-GGCGCGGCGca----CGUCGaCG-GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.