miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6902 3' -65.3 NC_001875.2 + 4897 0.71 0.196021
Target:  5'- uAACUCGCGCCGC----AGCUGCuCCCGg -3'
miRNA:   3'- -UUGGGCGCGGCGcacgUCGACG-GGGC- -5'
6902 3' -65.3 NC_001875.2 + 5508 0.67 0.384538
Target:  5'- cGACCgGCGCaCGCGcGCAGUUuacgccgGCCgCCGu -3'
miRNA:   3'- -UUGGgCGCG-GCGCaCGUCGA-------CGG-GGC- -5'
6902 3' -65.3 NC_001875.2 + 8778 0.66 0.443936
Target:  5'- cAGCCCGUGCUugGUG-GCaaacaAGCUGCCCa- -3'
miRNA:   3'- -UUGGGCGCGG--CGCaCG-----UCGACGGGgc -5'
6902 3' -65.3 NC_001875.2 + 10400 0.66 0.435258
Target:  5'- --gCCGCGCCGUGgcgcgGCAcccGCUGCacuaCCCa -3'
miRNA:   3'- uugGGCGCGGCGCa----CGU---CGACG----GGGc -5'
6902 3' -65.3 NC_001875.2 + 14512 0.69 0.29748
Target:  5'- cGCCCGCGCCGCGccgUGUcaAGCcGCUCa- -3'
miRNA:   3'- uUGGGCGCGGCGC---ACG--UCGaCGGGgc -5'
6902 3' -65.3 NC_001875.2 + 15347 0.71 0.200761
Target:  5'- aAGCCCGaacaaCGCCGCGUGCAGCacuaGCUgCa -3'
miRNA:   3'- -UUGGGC-----GCGGCGCACGUCGa---CGGgGc -5'
6902 3' -65.3 NC_001875.2 + 17045 0.73 0.153787
Target:  5'- gGAgCCGCGCaacaaCGCGaGCAGCUGCCCg- -3'
miRNA:   3'- -UUgGGCGCG-----GCGCaCGUCGACGGGgc -5'
6902 3' -65.3 NC_001875.2 + 17987 0.7 0.248043
Target:  5'- uGCCCGCGUUcaaCGUGCGGCccGaCCCCGa -3'
miRNA:   3'- uUGGGCGCGGc--GCACGUCGa-C-GGGGC- -5'
6902 3' -65.3 NC_001875.2 + 18481 0.71 0.215583
Target:  5'- uGCgCCGCGCCGCagcgacGCAGCcGCgCCCGa -3'
miRNA:   3'- uUG-GGCGCGGCGca----CGUCGaCG-GGGC- -5'
6902 3' -65.3 NC_001875.2 + 19859 0.69 0.265738
Target:  5'- aGACUCG-GCCGCGUcGCGGCgcggGCgCCGu -3'
miRNA:   3'- -UUGGGCgCGGCGCA-CGUCGa---CGgGGC- -5'
6902 3' -65.3 NC_001875.2 + 21568 0.67 0.377392
Target:  5'- cAGCCCGCGCgcucCGCG-GcCAGCcgGCCCa- -3'
miRNA:   3'- -UUGGGCGCG----GCGCaC-GUCGa-CGGGgc -5'
6902 3' -65.3 NC_001875.2 + 23088 1.05 0.000641
Target:  5'- cAACCCGCGCCGCGUGCAGCUGCCCCGc -3'
miRNA:   3'- -UUGGGCGCGGCGCACGUCGACGGGGC- -5'
6902 3' -65.3 NC_001875.2 + 32450 0.7 0.253831
Target:  5'- cGACCCgcugGCGCCGCcgGUGCGGC-GCUuuGg -3'
miRNA:   3'- -UUGGG----CGCGGCG--CACGUCGaCGGggC- -5'
6902 3' -65.3 NC_001875.2 + 33045 0.66 0.452712
Target:  5'- gGGCgCCGCGCCGCGcgGaUAGCguuccgcgcgGCUCCa -3'
miRNA:   3'- -UUG-GGCGCGGCGCa-C-GUCGa---------CGGGGc -5'
6902 3' -65.3 NC_001875.2 + 33966 0.66 0.4182
Target:  5'- uGCCCGUGCgGCGcGCAGCcGa-CCGg -3'
miRNA:   3'- uUGGGCGCGgCGCaCGUCGaCggGGC- -5'
6902 3' -65.3 NC_001875.2 + 34028 0.69 0.282526
Target:  5'- cAACCCGgGUCGCaG-GCAGCUGCacagcagcgcaaacCCCGu -3'
miRNA:   3'- -UUGGGCgCGGCG-CaCGUCGACG--------------GGGC- -5'
6902 3' -65.3 NC_001875.2 + 36819 0.71 0.200761
Target:  5'- ---aCGCGCCGCG-GCAGUUGCgcgCCCGc -3'
miRNA:   3'- uuggGCGCGGCGCaCGUCGACG---GGGC- -5'
6902 3' -65.3 NC_001875.2 + 37172 0.69 0.265738
Target:  5'- cACCCGUGCCGCGc---GCUGgCCCa -3'
miRNA:   3'- uUGGGCGCGGCGCacguCGACgGGGc -5'
6902 3' -65.3 NC_001875.2 + 37377 0.71 0.210541
Target:  5'- cGCgCGCGCCGC-UGCAguuuccGCUGCCgCCGu -3'
miRNA:   3'- uUGgGCGCGGCGcACGU------CGACGG-GGC- -5'
6902 3' -65.3 NC_001875.2 + 39582 0.66 0.410657
Target:  5'- --gCCGCGCugcucagcacggucCGCGUGCacgggcuaaaguagcGGCcgGCCCCGg -3'
miRNA:   3'- uugGGCGCG--------------GCGCACG---------------UCGa-CGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.