miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6919 3' -55.9 NC_001875.2 + 57308 0.66 0.874572
Target:  5'- -----cGGGCGCGCGucGUCGGcGACg -3'
miRNA:   3'- ugaagaCCCGCGCGUguCAGUCaCUG- -5'
6919 3' -55.9 NC_001875.2 + 85667 0.66 0.867056
Target:  5'- -aUUgUGGGCGCGC-CGGccugCAGcGACu -3'
miRNA:   3'- ugAAgACCCGCGCGuGUCa---GUCaCUG- -5'
6919 3' -55.9 NC_001875.2 + 42925 0.66 0.851368
Target:  5'- ----gUGGGCGU-CGCAGUCAaacGUGGCg -3'
miRNA:   3'- ugaagACCCGCGcGUGUCAGU---CACUG- -5'
6919 3' -55.9 NC_001875.2 + 40638 0.67 0.834851
Target:  5'- aGCUcaaCUGGGCGCGCACGcGcCGGcUGuuGCg -3'
miRNA:   3'- -UGAa--GACCCGCGCGUGU-CaGUC-AC--UG- -5'
6919 3' -55.9 NC_001875.2 + 131508 0.67 0.834851
Target:  5'- --gUCUGcGGCGCGCGguG-CAGcGGCu -3'
miRNA:   3'- ugaAGAC-CCGCGCGUguCaGUCaCUG- -5'
6919 3' -55.9 NC_001875.2 + 106012 0.67 0.8263
Target:  5'- gACUucaUCUGGGCGuUGCAguGcUCGGcgGGCg -3'
miRNA:   3'- -UGA---AGACCCGC-GCGUguC-AGUCa-CUG- -5'
6919 3' -55.9 NC_001875.2 + 65427 0.67 0.825435
Target:  5'- uACcUCguccGGCGUGCACcgcuggcGGUCGGUGGCc -3'
miRNA:   3'- -UGaAGac--CCGCGCGUG-------UCAGUCACUG- -5'
6919 3' -55.9 NC_001875.2 + 7001 0.67 0.812238
Target:  5'- uGCUUCgacGuGGCGCGC-CAGUUgcuggacguaagcgaGGUGGCc -3'
miRNA:   3'- -UGAAGa--C-CCGCGCGuGUCAG---------------UCACUG- -5'
6919 3' -55.9 NC_001875.2 + 63684 0.67 0.808653
Target:  5'- uGCUUaaugagGGGCGCGCACgAGgugCGcGUGAUu -3'
miRNA:   3'- -UGAAga----CCCGCGCGUG-UCa--GU-CACUG- -5'
6919 3' -55.9 NC_001875.2 + 884 0.67 0.798658
Target:  5'- --cUUUGGGCGCgagaacgGCGCAGUCGGccACg -3'
miRNA:   3'- ugaAGACCCGCG-------CGUGUCAGUCacUG- -5'
6919 3' -55.9 NC_001875.2 + 97529 0.67 0.790337
Target:  5'- uCUUCgGGGUGgGCGCGuUUGGUGGCc -3'
miRNA:   3'- uGAAGaCCCGCgCGUGUcAGUCACUG- -5'
6919 3' -55.9 NC_001875.2 + 122126 0.68 0.780952
Target:  5'- cGCUUC-GGGCGCGgCGCGGcCGGcgcgcacGACg -3'
miRNA:   3'- -UGAAGaCCCGCGC-GUGUCaGUCa------CUG- -5'
6919 3' -55.9 NC_001875.2 + 119883 0.68 0.760799
Target:  5'- uGCUUCUgcaacgcgccgccGGucGCGCGCACAGUCGGc-GCg -3'
miRNA:   3'- -UGAAGA-------------CC--CGCGCGUGUCAGUCacUG- -5'
6919 3' -55.9 NC_001875.2 + 89458 0.68 0.751997
Target:  5'- aACUgucUUUGGGCGC-CACGGcaaaAGUGGCg -3'
miRNA:   3'- -UGA---AGACCCGCGcGUGUCag--UCACUG- -5'
6919 3' -55.9 NC_001875.2 + 23005 0.69 0.732126
Target:  5'- cGCgUUUUGGGCGCGCACcguGuUCAGcguguugGACa -3'
miRNA:   3'- -UG-AAGACCCGCGCGUGu--C-AGUCa------CUG- -5'
6919 3' -55.9 NC_001875.2 + 23138 0.69 0.72205
Target:  5'- --aUUUGGGUuuGCGCGCAGUCGaagGGCg -3'
miRNA:   3'- ugaAGACCCG--CGCGUGUCAGUca-CUG- -5'
6919 3' -55.9 NC_001875.2 + 102181 0.69 0.72205
Target:  5'- ---aCUGGGCGCGUACAG-C-GUGGu -3'
miRNA:   3'- ugaaGACCCGCGCGUGUCaGuCACUg -5'
6919 3' -55.9 NC_001875.2 + 98372 0.69 0.710874
Target:  5'- uUUUCUGGGCGCGCcccgaccACGacgaGGUGGCg -3'
miRNA:   3'- uGAAGACCCGCGCG-------UGUcag-UCACUG- -5'
6919 3' -55.9 NC_001875.2 + 71913 0.69 0.681037
Target:  5'- ---aCUGGGCGUGCGC-GUCGGcGAg -3'
miRNA:   3'- ugaaGACCCGCGCGUGuCAGUCaCUg -5'
6919 3' -55.9 NC_001875.2 + 90670 0.72 0.535808
Target:  5'- cGCUggcgCUGGGgcUGCGCACAGUCAacgagGGCa -3'
miRNA:   3'- -UGAa---GACCC--GCGCGUGUCAGUca---CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.