miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
692 3' -59.4 AC_000018.1 + 22568 0.66 0.380196
Target:  5'- gCCu---GCCCAUcacgGGAGCGCAgCCUGGc -3'
miRNA:   3'- -GGuacuCGGGUG----UCUCGCGU-GGGCCa -5'
692 3' -59.4 AC_000018.1 + 5304 0.67 0.345644
Target:  5'- aCCAUGAGUUCGuaguuGAGCGC-CUCGGc -3'
miRNA:   3'- -GGUACUCGGGUgu---CUCGCGuGGGCCa -5'
692 3' -59.4 AC_000018.1 + 6393 0.68 0.301161
Target:  5'- gCAUGAGCUCAuCAGGGgggucCGCAucuaugguaaauauuCCCGGUa -3'
miRNA:   3'- gGUACUCGGGU-GUCUC-----GCGU---------------GGGCCA- -5'
692 3' -59.4 AC_000018.1 + 23069 0.68 0.283494
Target:  5'- --cUGAgaucGCCCACaauaguugGGAGUGCACCgGGUg -3'
miRNA:   3'- gguACU----CGGGUG--------UCUCGCGUGGgCCA- -5'
692 3' -59.4 AC_000018.1 + 27773 0.68 0.283494
Target:  5'- uCCGUGGGCcggacCCugAGGGUGCuCCuCGGg -3'
miRNA:   3'- -GGUACUCG-----GGugUCUCGCGuGG-GCCa -5'
692 3' -59.4 AC_000018.1 + 10234 0.69 0.255888
Target:  5'- cCCcgGAGCCCcggcuACAGAGCGaugGCCCc-- -3'
miRNA:   3'- -GGuaCUCGGG-----UGUCUCGCg--UGGGcca -5'
692 3' -59.4 AC_000018.1 + 5626 0.7 0.207315
Target:  5'- uUAUGGGCCUguccucgaGCGGAGUGC-CUCGGUc -3'
miRNA:   3'- gGUACUCGGG--------UGUCUCGCGuGGGCCA- -5'
692 3' -59.4 AC_000018.1 + 22979 1.09 0.000222
Target:  5'- uCCAUGAGCCCACAGAGCGCACCCGGUg -3'
miRNA:   3'- -GGUACUCGGGUGUCUCGCGUGGGCCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.