miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6935 5' -54.6 NC_001875.2 + 17101 0.67 0.880602
Target:  5'- aGCCGCgCGCCACugGCg---GCcGCAUa -3'
miRNA:   3'- -UGGUG-GUGGUGugUGaacaCGuCGUG- -5'
6935 5' -54.6 NC_001875.2 + 18141 0.67 0.865506
Target:  5'- -aCGCCACUgugAguUACUgGUGCGGCGCg -3'
miRNA:   3'- ugGUGGUGG---UguGUGAaCACGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 19426 0.67 0.865506
Target:  5'- aACgACUACCGCAUugUgcUGCGGcCGCg -3'
miRNA:   3'- -UGgUGGUGGUGUGugAacACGUC-GUG- -5'
6935 5' -54.6 NC_001875.2 + 26885 0.68 0.796697
Target:  5'- cCCGCCGCCGCACACgagcaacUGCuacaacaacAGCAUu -3'
miRNA:   3'- uGGUGGUGGUGUGUGaac----ACG---------UCGUG- -5'
6935 5' -54.6 NC_001875.2 + 28850 0.67 0.87317
Target:  5'- uGCCGCaCGCCAC-CAC--GUGCccgcagGGCACa -3'
miRNA:   3'- -UGGUG-GUGGUGuGUGaaCACG------UCGUG- -5'
6935 5' -54.6 NC_001875.2 + 29270 0.66 0.914118
Target:  5'- gGCCGCCgACCGCGC-Cg---GCGGgGCg -3'
miRNA:   3'- -UGGUGG-UGGUGUGuGaacaCGUCgUG- -5'
6935 5' -54.6 NC_001875.2 + 29845 0.78 0.285312
Target:  5'- cACCGCCGCCGCGCACgcc-GCAauGCACa -3'
miRNA:   3'- -UGGUGGUGGUGUGUGaacaCGU--CGUG- -5'
6935 5' -54.6 NC_001875.2 + 30801 0.71 0.665523
Target:  5'- aGCCGCCACUcaaACGCugUaggcUGUGCcaccaGGCGCu -3'
miRNA:   3'- -UGGUGGUGG---UGUGugA----ACACG-----UCGUG- -5'
6935 5' -54.6 NC_001875.2 + 30852 0.68 0.796697
Target:  5'- aACCGCCGCaaaCGC-CGCggccUGCAGCGCg -3'
miRNA:   3'- -UGGUGGUG---GUGuGUGaac-ACGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 31121 0.66 0.900797
Target:  5'- uGCCGCgCGCCGCAgCAa-UGUGCAugcuuaacgcgccGCGCg -3'
miRNA:   3'- -UGGUG-GUGGUGU-GUgaACACGU-------------CGUG- -5'
6935 5' -54.6 NC_001875.2 + 31546 0.69 0.787283
Target:  5'- cACCACUugCACGCGCUgcagGUugggcccgGCGGCu- -3'
miRNA:   3'- -UGGUGGugGUGUGUGAa---CA--------CGUCGug -5'
6935 5' -54.6 NC_001875.2 + 32453 0.68 0.832664
Target:  5'- cCCGCUGgCGC-CGCcgGUGCGGCGCu -3'
miRNA:   3'- uGGUGGUgGUGuGUGaaCACGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 34079 0.69 0.768016
Target:  5'- cGCCAacaGCCACACGCccGUGCcgggguuGCACg -3'
miRNA:   3'- -UGGUgg-UGGUGUGUGaaCACGu------CGUG- -5'
6935 5' -54.6 NC_001875.2 + 34080 0.69 0.776755
Target:  5'- cGuuGCCGCCACGCGCUUGUcgaucaccccguuGCugAGCAa -3'
miRNA:   3'- -UggUGGUGGUGUGUGAACA-------------CG--UCGUg -5'
6935 5' -54.6 NC_001875.2 + 35662 0.73 0.559974
Target:  5'- cGCgGCCAUCAgGCACUUGUGC-GCu- -3'
miRNA:   3'- -UGgUGGUGGUgUGUGAACACGuCGug -5'
6935 5' -54.6 NC_001875.2 + 36892 0.68 0.795763
Target:  5'- gGCaCACCGCCggcaggaACugGgUUGUGUAGUGCg -3'
miRNA:   3'- -UG-GUGGUGG-------UGugUgAACACGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 37095 0.69 0.768016
Target:  5'- -aCACCGCCGCGUGggUGUGCGGgCGCg -3'
miRNA:   3'- ugGUGGUGGUGUGUgaACACGUC-GUG- -5'
6935 5' -54.6 NC_001875.2 + 37351 0.74 0.498695
Target:  5'- uGCgCGCgGCCGCGCGCUcGUGCGaacGCGCg -3'
miRNA:   3'- -UG-GUGgUGGUGUGUGAaCACGU---CGUG- -5'
6935 5' -54.6 NC_001875.2 + 38457 0.73 0.539265
Target:  5'- --uGCCGgCGCGCGCUagaauugGUGCAGCGCg -3'
miRNA:   3'- uggUGGUgGUGUGUGAa------CACGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 39640 0.66 0.914118
Target:  5'- gGCgCGCagcgaACCGCGCGCgaguUUGggccgGCGGCGCg -3'
miRNA:   3'- -UG-GUGg----UGGUGUGUG----AACa----CGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.