miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6935 5' -54.6 NC_001875.2 + 1744 0.66 0.89475
Target:  5'- cGCCGCCGCCGC-CAUUUccGuCGGCGg -3'
miRNA:   3'- -UGGUGGUGGUGuGUGAAcaC-GUCGUg -5'
6935 5' -54.6 NC_001875.2 + 1792 0.66 0.89475
Target:  5'- cGCCGCCGCCGC-CAUUUccGuCGGCGg -3'
miRNA:   3'- -UGGUGGUGGUGuGUGAAcaC-GUCGUg -5'
6935 5' -54.6 NC_001875.2 + 2737 0.68 0.823944
Target:  5'- aGCCGCCGCCuuuuuuggcCAgGCUgaUGCGGUACu -3'
miRNA:   3'- -UGGUGGUGGu--------GUgUGAacACGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 2941 0.7 0.728004
Target:  5'- cACCGCgCGCUgGCGCGCUUGcucgGCAGCGg -3'
miRNA:   3'- -UGGUG-GUGG-UGUGUGAACa---CGUCGUg -5'
6935 5' -54.6 NC_001875.2 + 3645 0.67 0.841187
Target:  5'- uCUAaaGCCGCugGCgugUGUGCuGCGCg -3'
miRNA:   3'- uGGUggUGGUGugUGa--ACACGuCGUG- -5'
6935 5' -54.6 NC_001875.2 + 4245 0.68 0.832664
Target:  5'- gUCACCucacCCACACACUuggcguccauccUGUaaaagugcaGCAGCGCg -3'
miRNA:   3'- uGGUGGu---GGUGUGUGA------------ACA---------CGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 4972 0.69 0.758182
Target:  5'- uCCACCAUUaacugcaaaGCGCcucGCUgcUGUGCGGCACu -3'
miRNA:   3'- uGGUGGUGG---------UGUG---UGA--ACACGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 6720 0.7 0.697027
Target:  5'- uGCC-CCGCCACAauugcgcuCGCUUGUGC-GCGu -3'
miRNA:   3'- -UGGuGGUGGUGU--------GUGAACACGuCGUg -5'
6935 5' -54.6 NC_001875.2 + 6740 0.66 0.914118
Target:  5'- aACCG-CAUCACGCGCagcaacgaUGUGCcGCGCa -3'
miRNA:   3'- -UGGUgGUGGUGUGUGa-------ACACGuCGUG- -5'
6935 5' -54.6 NC_001875.2 + 6965 0.68 0.815037
Target:  5'- cAUCGCCACgGCGCGCUgcuUGaCAGCGg -3'
miRNA:   3'- -UGGUGGUGgUGUGUGAac-AC-GUCGUg -5'
6935 5' -54.6 NC_001875.2 + 7040 0.67 0.841187
Target:  5'- -gCGCCGCCACGCug--GUGCAagacauaauccGCGCg -3'
miRNA:   3'- ugGUGGUGGUGUGugaaCACGU-----------CGUG- -5'
6935 5' -54.6 NC_001875.2 + 7078 0.68 0.815037
Target:  5'- cGCCACCgGCCuguGCGCAgacaUGCAGCGCg -3'
miRNA:   3'- -UGGUGG-UGG---UGUGUgaacACGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 7124 0.71 0.676066
Target:  5'- gACCGCCACgCGC-CGCUUGccaGGCGCg -3'
miRNA:   3'- -UGGUGGUG-GUGuGUGAACacgUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 9756 0.67 0.848685
Target:  5'- uCCACCGCCguuccgaggccaaGCGCAC----GCGGCACa -3'
miRNA:   3'- uGGUGGUGG-------------UGUGUGaacaCGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 10299 0.68 0.796697
Target:  5'- gGCCuuuGCCgACUACGCGCUgGUGUuugGGCACc -3'
miRNA:   3'- -UGG---UGG-UGGUGUGUGAaCACG---UCGUG- -5'
6935 5' -54.6 NC_001875.2 + 10395 0.7 0.697027
Target:  5'- -aCGCCGCCGCGC-CgugGcGCGGCACc -3'
miRNA:   3'- ugGUGGUGGUGUGuGaa-CaCGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 10561 0.66 0.914118
Target:  5'- cCCACCAUCAgGCAgCUgcgcgacaacGUGCAGCuGCu -3'
miRNA:   3'- uGGUGGUGGUgUGU-GAa---------CACGUCG-UG- -5'
6935 5' -54.6 NC_001875.2 + 11043 0.71 0.623154
Target:  5'- gACCAguuUCACCACGCGCgcaaacUGCAGCAg -3'
miRNA:   3'- -UGGU---GGUGGUGUGUGaac---ACGUCGUg -5'
6935 5' -54.6 NC_001875.2 + 13739 0.68 0.805951
Target:  5'- uCCACCACUcgcgcggcgucGCGCACaaagUGgugGCAGCAg -3'
miRNA:   3'- uGGUGGUGG-----------UGUGUGa---ACa--CGUCGUg -5'
6935 5' -54.6 NC_001875.2 + 14934 0.75 0.440587
Target:  5'- cGCCAcCCGCCGCGCGCg---GCuAGCGCa -3'
miRNA:   3'- -UGGU-GGUGGUGUGUGaacaCG-UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.