miRNA display CGI


Results 1 - 20 of 161 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6935 5' -54.6 NC_001875.2 + 90819 0.66 0.891998
Target:  5'- uCCACgGCCACGCGgUUGgcgaccugcuuuaGguGCGCg -3'
miRNA:   3'- uGGUGgUGGUGUGUgAACa------------CguCGUG- -5'
6935 5' -54.6 NC_001875.2 + 85845 0.66 0.89475
Target:  5'- ----gCACCGCGUugUUGUGguGCGCg -3'
miRNA:   3'- uggugGUGGUGUGugAACACguCGUG- -5'
6935 5' -54.6 NC_001875.2 + 89713 0.66 0.887797
Target:  5'- cCCGCCAgcuaaUCACGgACaaGUGCAGCGa -3'
miRNA:   3'- uGGUGGU-----GGUGUgUGaaCACGUCGUg -5'
6935 5' -54.6 NC_001875.2 + 39640 0.66 0.914118
Target:  5'- gGCgCGCagcgaACCGCGCGCgaguUUGggccgGCGGCGCg -3'
miRNA:   3'- -UG-GUGg----UGGUGUGUG----AACa----CGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 43343 0.66 0.89475
Target:  5'- cGCCGCgCACCACGUACUUGcGCuccAGuCGCu -3'
miRNA:   3'- -UGGUG-GUGGUGUGUGAACaCG---UC-GUG- -5'
6935 5' -54.6 NC_001875.2 + 47169 0.66 0.914118
Target:  5'- cCCGCCACCAacgcuGCACgaaUGCAagGCGCu -3'
miRNA:   3'- uGGUGGUGGUg----UGUGaacACGU--CGUG- -5'
6935 5' -54.6 NC_001875.2 + 79465 0.66 0.914118
Target:  5'- gACgCACCugCACuugcgcucuuggACGCUgGcGCGGCACg -3'
miRNA:   3'- -UG-GUGGugGUG------------UGUGAaCaCGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 49524 0.66 0.901457
Target:  5'- gACCGCgACCAguCGCUgGUGCuGgACu -3'
miRNA:   3'- -UGGUGgUGGUguGUGAaCACGuCgUG- -5'
6935 5' -54.6 NC_001875.2 + 71680 0.66 0.887797
Target:  5'- uGCCGCCGaCACaAUGCggcGUGguGCACg -3'
miRNA:   3'- -UGGUGGUgGUG-UGUGaa-CACguCGUG- -5'
6935 5' -54.6 NC_001875.2 + 10561 0.66 0.914118
Target:  5'- cCCACCAUCAgGCAgCUgcgcgacaacGUGCAGCuGCu -3'
miRNA:   3'- uGGUGGUGGUgUGU-GAa---------CACGUCG-UG- -5'
6935 5' -54.6 NC_001875.2 + 114467 0.66 0.89475
Target:  5'- uCCGCCACgUugGCGgUagagaUGUGCGGCAg -3'
miRNA:   3'- uGGUGGUG-GugUGUgA-----ACACGUCGUg -5'
6935 5' -54.6 NC_001875.2 + 131795 0.66 0.887088
Target:  5'- cGCCGCCGCCgaguugaGCACcaACUgcguggggacgUGUGCguuuaGGCACa -3'
miRNA:   3'- -UGGUGGUGG-------UGUG--UGA-----------ACACG-----UCGUG- -5'
6935 5' -54.6 NC_001875.2 + 49602 0.66 0.907913
Target:  5'- cGCUACCACCAgCGCGCaa--GCGGCu- -3'
miRNA:   3'- -UGGUGGUGGU-GUGUGaacaCGUCGug -5'
6935 5' -54.6 NC_001875.2 + 29270 0.66 0.914118
Target:  5'- gGCCGCCgACCGCGC-Cg---GCGGgGCg -3'
miRNA:   3'- -UGGUGG-UGGUGUGuGaacaCGUCgUG- -5'
6935 5' -54.6 NC_001875.2 + 47471 0.66 0.894066
Target:  5'- cGCCGCCccggcagGCCGCGCACcuac-CGGCGCa -3'
miRNA:   3'- -UGGUGG-------UGGUGUGUGaacacGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 40739 0.66 0.89475
Target:  5'- -aCGCUGCUGCACAUUgccaaGUGCAGC-Ca -3'
miRNA:   3'- ugGUGGUGGUGUGUGAa----CACGUCGuG- -5'
6935 5' -54.6 NC_001875.2 + 1792 0.66 0.89475
Target:  5'- cGCCGCCGCCGC-CAUUUccGuCGGCGg -3'
miRNA:   3'- -UGGUGGUGGUGuGUGAAcaC-GUCGUg -5'
6935 5' -54.6 NC_001875.2 + 102046 0.66 0.885664
Target:  5'- cGCCGCCAgcgcCCGCACAgucccgcacgaucaUUUGggGCgAGCACa -3'
miRNA:   3'- -UGGUGGU----GGUGUGU--------------GAACa-CG-UCGUG- -5'
6935 5' -54.6 NC_001875.2 + 113666 0.66 0.914118
Target:  5'- cGCCGgCACCGC-CACagUG-GCGGCGu -3'
miRNA:   3'- -UGGUgGUGGUGuGUGa-ACaCGUCGUg -5'
6935 5' -54.6 NC_001875.2 + 54571 0.66 0.907913
Target:  5'- cGCCGCgGCgGC-CGCUUcgcccgGCGGCGCg -3'
miRNA:   3'- -UGGUGgUGgUGuGUGAAca----CGUCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.