miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6935 5' -54.6 NC_001875.2 + 45502 1.1 0.002291
Target:  5'- cACCACCACCACACACUUGUGCAGCACg -3'
miRNA:   3'- -UGGUGGUGGUGUGUGAACACGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 58235 0.83 0.15075
Target:  5'- aGCCGCCGCCGCaacaguugGCGCUcGUGCAGCAa -3'
miRNA:   3'- -UGGUGGUGGUG--------UGUGAaCACGUCGUg -5'
6935 5' -54.6 NC_001875.2 + 51923 0.81 0.185988
Target:  5'- uGCCGCCGCUGCACAgc-GUGCGGCGCu -3'
miRNA:   3'- -UGGUGGUGGUGUGUgaaCACGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 75537 0.79 0.246148
Target:  5'- cGCCACCGCCAUACGCUUG---GGCGCc -3'
miRNA:   3'- -UGGUGGUGGUGUGUGAACacgUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 94790 0.79 0.258684
Target:  5'- gGCCGCguCCGCGCGC--GUGCAGCGCc -3'
miRNA:   3'- -UGGUGguGGUGUGUGaaCACGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 92530 0.79 0.258684
Target:  5'- cGCaCGCCGCCG-GCACggUGUGCAGCGCg -3'
miRNA:   3'- -UG-GUGGUGGUgUGUGa-ACACGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 29845 0.78 0.285312
Target:  5'- cACCGCCGCCGCGCACgcc-GCAauGCACa -3'
miRNA:   3'- -UGGUGGUGGUGUGUGaacaCGU--CGUG- -5'
6935 5' -54.6 NC_001875.2 + 85604 0.78 0.285312
Target:  5'- cGCCuCCACCaACGCGCUUGUgauaucguucGCAGCGCc -3'
miRNA:   3'- -UGGuGGUGG-UGUGUGAACA----------CGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 54457 0.77 0.352995
Target:  5'- aGCCGCggCGCCGCACAgcgUGUGCGGCAg -3'
miRNA:   3'- -UGGUG--GUGGUGUGUga-ACACGUCGUg -5'
6935 5' -54.6 NC_001875.2 + 62834 0.75 0.41301
Target:  5'- aGCgCGCCACCACGUGCUUGcccccGCGGCACu -3'
miRNA:   3'- -UG-GUGGUGGUGUGUGAACa----CGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 121194 0.75 0.422084
Target:  5'- uCCGCCGCCcaaguacuGCACGCUgg-GCGGCACc -3'
miRNA:   3'- uGGUGGUGG--------UGUGUGAacaCGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 14934 0.75 0.440587
Target:  5'- cGCCAcCCGCCGCGCGCg---GCuAGCGCa -3'
miRNA:   3'- -UGGU-GGUGGUGUGUGaacaCG-UCGUG- -5'
6935 5' -54.6 NC_001875.2 + 77376 0.74 0.459543
Target:  5'- gUC-CUGCCGCACACgcUGUGCGGCGCc -3'
miRNA:   3'- uGGuGGUGGUGUGUGa-ACACGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 53892 0.74 0.498695
Target:  5'- gGCCGCCGCgGCGCAaauaaUUGUG-GGCGCg -3'
miRNA:   3'- -UGGUGGUGgUGUGUg----AACACgUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 82400 0.74 0.498695
Target:  5'- uCCACCgucaGCCGCGCGgUUucguacaaGUGCAGCGCa -3'
miRNA:   3'- uGGUGG----UGGUGUGUgAA--------CACGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 63290 0.74 0.498695
Target:  5'- gACCGCCGCCGC-CGCg---GCGGCAa -3'
miRNA:   3'- -UGGUGGUGGUGuGUGaacaCGUCGUg -5'
6935 5' -54.6 NC_001875.2 + 37351 0.74 0.498695
Target:  5'- uGCgCGCgGCCGCGCGCUcGUGCGaacGCGCg -3'
miRNA:   3'- -UG-GUGgUGGUGUGUGAaCACGU---CGUG- -5'
6935 5' -54.6 NC_001875.2 + 79913 0.73 0.508717
Target:  5'- -gUAgCGCCGCACGC-UGUGCAGCGg -3'
miRNA:   3'- ugGUgGUGGUGUGUGaACACGUCGUg -5'
6935 5' -54.6 NC_001875.2 + 77409 0.73 0.518824
Target:  5'- aACgACCGCCACGCGCU-GUucggcgacaagaGCGGCAUg -3'
miRNA:   3'- -UGgUGGUGGUGUGUGAaCA------------CGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 110764 0.73 0.529008
Target:  5'- gACCGCCGCCGCGCGCUUuUGCccaaaACg -3'
miRNA:   3'- -UGGUGGUGGUGUGUGAAcACGucg--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.