miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6935 5' -54.6 NC_001875.2 + 128644 0.7 0.697027
Target:  5'- aACCGCCGCCGCAacCugUcucUGguGCGCg -3'
miRNA:   3'- -UGGUGGUGGUGU--GugAac-ACguCGUG- -5'
6935 5' -54.6 NC_001875.2 + 121928 0.72 0.570412
Target:  5'- aGCCAUUgcgGCCACAUcUUUGUGguGCGCg -3'
miRNA:   3'- -UGGUGG---UGGUGUGuGAACACguCGUG- -5'
6935 5' -54.6 NC_001875.2 + 93091 0.72 0.612558
Target:  5'- cGCCGacuUCACCuACcCGCUUGUGguGCGCu -3'
miRNA:   3'- -UGGU---GGUGG-UGuGUGAACACguCGUG- -5'
6935 5' -54.6 NC_001875.2 + 11043 0.71 0.623154
Target:  5'- gACCAguuUCACCACGCGCgcaaacUGCAGCAg -3'
miRNA:   3'- -UGGU---GGUGGUGUGUGaac---ACGUCGUg -5'
6935 5' -54.6 NC_001875.2 + 95743 0.71 0.623154
Target:  5'- cGCCGCCGCCGCGUGCUgccGcGCgAGCGCg -3'
miRNA:   3'- -UGGUGGUGGUGUGUGAa--CaCG-UCGUG- -5'
6935 5' -54.6 NC_001875.2 + 107511 0.71 0.623154
Target:  5'- -aCGCCGCgGCACGCUUGU-UGGCGCc -3'
miRNA:   3'- ugGUGGUGgUGUGUGAACAcGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 89312 0.71 0.644359
Target:  5'- cGCCGCCACCAUGCGCUUcGgcucgcucaUGCAaacaauGCACu -3'
miRNA:   3'- -UGGUGGUGGUGUGUGAA-C---------ACGU------CGUG- -5'
6935 5' -54.6 NC_001875.2 + 7124 0.71 0.676066
Target:  5'- gACCGCCACgCGC-CGCUUGccaGGCGCg -3'
miRNA:   3'- -UGGUGGUG-GUGuGUGAACacgUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 6720 0.7 0.697027
Target:  5'- uGCC-CCGCCACAauugcgcuCGCUUGUGC-GCGu -3'
miRNA:   3'- -UGGuGGUGGUGU--------GUGAACACGuCGUg -5'
6935 5' -54.6 NC_001875.2 + 83348 0.72 0.570412
Target:  5'- uGCCGCaCGCUACACAUgucgucgGCGGCGCu -3'
miRNA:   3'- -UGGUG-GUGGUGUGUGaaca---CGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 35662 0.73 0.559974
Target:  5'- cGCgGCCAUCAgGCACUUGUGC-GCu- -3'
miRNA:   3'- -UGgUGGUGGUgUGUGAACACGuCGug -5'
6935 5' -54.6 NC_001875.2 + 38457 0.73 0.539265
Target:  5'- --uGCCGgCGCGCGCUagaauugGUGCAGCGCg -3'
miRNA:   3'- uggUGGUgGUGUGUGAa------CACGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 58235 0.83 0.15075
Target:  5'- aGCCGCCGCCGCaacaguugGCGCUcGUGCAGCAa -3'
miRNA:   3'- -UGGUGGUGGUG--------UGUGAaCACGUCGUg -5'
6935 5' -54.6 NC_001875.2 + 51923 0.81 0.185988
Target:  5'- uGCCGCCGCUGCACAgc-GUGCGGCGCu -3'
miRNA:   3'- -UGGUGGUGGUGUGUgaaCACGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 29845 0.78 0.285312
Target:  5'- cACCGCCGCCGCGCACgcc-GCAauGCACa -3'
miRNA:   3'- -UGGUGGUGGUGUGUGaacaCGU--CGUG- -5'
6935 5' -54.6 NC_001875.2 + 54457 0.77 0.352995
Target:  5'- aGCCGCggCGCCGCACAgcgUGUGCGGCAg -3'
miRNA:   3'- -UGGUG--GUGGUGUGUga-ACACGUCGUg -5'
6935 5' -54.6 NC_001875.2 + 37351 0.74 0.498695
Target:  5'- uGCgCGCgGCCGCGCGCUcGUGCGaacGCGCg -3'
miRNA:   3'- -UG-GUGgUGGUGUGUGAaCACGU---CGUG- -5'
6935 5' -54.6 NC_001875.2 + 53892 0.74 0.498695
Target:  5'- gGCCGCCGCgGCGCAaauaaUUGUG-GGCGCg -3'
miRNA:   3'- -UGGUGGUGgUGUGUg----AACACgUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 71176 0.73 0.529008
Target:  5'- uGCCGCCAgCGCGCACUUugGUAcGCGCa -3'
miRNA:   3'- -UGGUGGUgGUGUGUGAAcaCGU-CGUG- -5'
6935 5' -54.6 NC_001875.2 + 110764 0.73 0.529008
Target:  5'- gACCGCCGCCGCGCGCUUuUGCccaaaACg -3'
miRNA:   3'- -UGGUGGUGGUGUGUGAAcACGucg--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.