miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6941 3' -52.3 NC_001875.2 + 83591 0.66 0.977846
Target:  5'- -gGACGCCGCgcgccuuauucacggUguucggcgCGUUCcGCGCCAGCa -3'
miRNA:   3'- agUUGUGGCG---------------Ga-------GCAAGaUGCGGUUG- -5'
6941 3' -52.3 NC_001875.2 + 72744 0.66 0.976856
Target:  5'- gCGACGCCgucaGCCUggaaacCGUUUccGCGCCGGCc -3'
miRNA:   3'- aGUUGUGG----CGGA------GCAAGa-UGCGGUUG- -5'
6941 3' -52.3 NC_001875.2 + 73022 0.66 0.976856
Target:  5'- gCAACGCgCGCauuuccgCGUgcagCUGgGCCAACu -3'
miRNA:   3'- aGUUGUG-GCGga-----GCAa---GAUgCGGUUG- -5'
6941 3' -52.3 NC_001875.2 + 87 0.66 0.976856
Target:  5'- --cGCGCCGCC-CGaUCcgcCGCCGGCc -3'
miRNA:   3'- aguUGUGGCGGaGCaAGau-GCGGUUG- -5'
6941 3' -52.3 NC_001875.2 + 18171 0.66 0.976856
Target:  5'- gCGACGCCGCCacUGUggCggUGCCGGCg -3'
miRNA:   3'- aGUUGUGGCGGa-GCAa-GauGCGGUUG- -5'
6941 3' -52.3 NC_001875.2 + 21679 0.66 0.975311
Target:  5'- gCGACGCCGCCcgacgagcgcgacgCGgugCUGCGguCCAGCc -3'
miRNA:   3'- aGUUGUGGCGGa-------------GCaa-GAUGC--GGUUG- -5'
6941 3' -52.3 NC_001875.2 + 99872 0.66 0.97424
Target:  5'- --uACGCgCGCCacacgCGUUCgucguCGCCGGCa -3'
miRNA:   3'- aguUGUG-GCGGa----GCAAGau---GCGGUUG- -5'
6941 3' -52.3 NC_001875.2 + 104123 0.66 0.97424
Target:  5'- gCAACGCguugcccguCGCCUCGUUgUGCgGCUcaAACg -3'
miRNA:   3'- aGUUGUG---------GCGGAGCAAgAUG-CGG--UUG- -5'
6941 3' -52.3 NC_001875.2 + 91205 0.66 0.97424
Target:  5'- gUCGGguCCGCCUCGUagUAgGCgaGGCg -3'
miRNA:   3'- -AGUUguGGCGGAGCAagAUgCGg-UUG- -5'
6941 3' -52.3 NC_001875.2 + 85635 0.66 0.97424
Target:  5'- gCAGCGCCGCCacucaacgagcUCGaagcggUCUugaACGCCAccaACg -3'
miRNA:   3'- aGUUGUGGCGG-----------AGCa-----AGA---UGCGGU---UG- -5'
6941 3' -52.3 NC_001875.2 + 13534 0.66 0.97424
Target:  5'- gCGGCcgGCCGCCUCGacccugUCgGCGUaCAACa -3'
miRNA:   3'- aGUUG--UGGCGGAGCa-----AGaUGCG-GUUG- -5'
6941 3' -52.3 NC_001875.2 + 94242 0.66 0.973136
Target:  5'- --cACGCCGCCgugcggccggccgCGgcgCUcGCGCCGGCg -3'
miRNA:   3'- aguUGUGGCGGa------------GCaa-GA-UGCGGUUG- -5'
6941 3' -52.3 NC_001875.2 + 52370 0.66 0.971416
Target:  5'- gCGAUuuUUGCCUCGUggccagCUcaaACGCCAGCu -3'
miRNA:   3'- aGUUGu-GGCGGAGCAa-----GA---UGCGGUUG- -5'
6941 3' -52.3 NC_001875.2 + 114161 0.66 0.971416
Target:  5'- gUCGcaGCCGCgUCGgcuaaACGCCAGCu -3'
miRNA:   3'- -AGUugUGGCGgAGCaaga-UGCGGUUG- -5'
6941 3' -52.3 NC_001875.2 + 18220 0.66 0.971416
Target:  5'- cCAAuCGCCGCUgaccUGUUCggugcGCGUCAACa -3'
miRNA:   3'- aGUU-GUGGCGGa---GCAAGa----UGCGGUUG- -5'
6941 3' -52.3 NC_001875.2 + 118982 0.66 0.971416
Target:  5'- uUCAAgACCGaUUCGUUUgcGCGCCAGa -3'
miRNA:   3'- -AGUUgUGGCgGAGCAAGa-UGCGGUUg -5'
6941 3' -52.3 NC_001875.2 + 46926 0.66 0.968375
Target:  5'- gCuuCGCCaGCCcCGUgcugcgCUACGCCAAg -3'
miRNA:   3'- aGuuGUGG-CGGaGCAa-----GAUGCGGUUg -5'
6941 3' -52.3 NC_001875.2 + 113668 0.66 0.968375
Target:  5'- cCGGCACCGCCacaguggCGgcgUCgcgcGCGCCGc- -3'
miRNA:   3'- aGUUGUGGCGGa------GCa--AGa---UGCGGUug -5'
6941 3' -52.3 NC_001875.2 + 54643 0.66 0.968375
Target:  5'- gCGGCA-CGCCUCGUcCggaACGCCGu- -3'
miRNA:   3'- aGUUGUgGCGGAGCAaGa--UGCGGUug -5'
6941 3' -52.3 NC_001875.2 + 34771 0.66 0.965112
Target:  5'- uUCAAUguaaguGCCGCauucgucgcaCUCGUUaaugUGCGCCGGCa -3'
miRNA:   3'- -AGUUG------UGGCG----------GAGCAAg---AUGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.