Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6951 | 5' | -53.1 | NC_001875.2 | + | 61912 | 1.08 | 0.005814 |
Target: 5'- gCCGUGUCACGGCGGAAACGCGAACAAu -3' miRNA: 3'- -GGCACAGUGCCGCCUUUGCGCUUGUU- -5' |
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6951 | 5' | -53.1 | NC_001875.2 | + | 100161 | 0.75 | 0.583227 |
Target: 5'- gCgGUGaUCACGGUGG--GCGCGAGCGg -3' miRNA: 3'- -GgCAC-AGUGCCGCCuuUGCGCUUGUu -5' |
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6951 | 5' | -53.1 | NC_001875.2 | + | 110065 | 0.74 | 0.656391 |
Target: 5'- cCCGUGUCGCGcGCaGAGACGCu-GCGc -3' miRNA: 3'- -GGCACAGUGC-CGcCUUUGCGcuUGUu -5' |
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6951 | 5' | -53.1 | NC_001875.2 | + | 37040 | 0.73 | 0.687612 |
Target: 5'- gCCGUG-CACGGCGcGugcacgcGCGCGGACGc -3' miRNA: 3'- -GGCACaGUGCCGC-Cuu-----UGCGCUUGUu -5' |
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6951 | 5' | -53.1 | NC_001875.2 | + | 69953 | 0.72 | 0.74849 |
Target: 5'- gCGUGUCgggccACGGCGaAAACGCGAcCAAc -3' miRNA: 3'- gGCACAG-----UGCCGCcUUUGCGCUuGUU- -5' |
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6951 | 5' | -53.1 | NC_001875.2 | + | 80610 | 0.72 | 0.74849 |
Target: 5'- -gGUcGUCACGGUGGgcGCGCgGAACGc -3' miRNA: 3'- ggCA-CAGUGCCGCCuuUGCG-CUUGUu -5' |
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6951 | 5' | -53.1 | NC_001875.2 | + | 19866 | 0.72 | 0.755382 |
Target: 5'- gCCGcGUCGCGGCGcgggcgccguuugcGAAACGCGuGCGc -3' miRNA: 3'- -GGCaCAGUGCCGC--------------CUUUGCGCuUGUu -5' |
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6951 | 5' | -53.1 | NC_001875.2 | + | 28645 | 0.71 | 0.787066 |
Target: 5'- cCCGUGUCguggaACGuGUGGAAcggcgGCGUGGGCGAc -3' miRNA: 3'- -GGCACAG-----UGC-CGCCUU-----UGCGCUUGUU- -5' |
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6951 | 5' | -53.1 | NC_001875.2 | + | 15305 | 0.71 | 0.79637 |
Target: 5'- ---aGUUACGGUGGccauuAACGCGAACAc -3' miRNA: 3'- ggcaCAGUGCCGCCu----UUGCGCUUGUu -5' |
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6951 | 5' | -53.1 | NC_001875.2 | + | 115113 | 0.7 | 0.840377 |
Target: 5'- aCGUaUUACGGCGGGGagauACGCG-ACAAa -3' miRNA: 3'- gGCAcAGUGCCGCCUU----UGCGCuUGUU- -5' |
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6951 | 5' | -53.1 | NC_001875.2 | + | 70303 | 0.7 | 0.855856 |
Target: 5'- aCCGUGUCccacaugAUGGCcgccAAGCGCGAGCAc -3' miRNA: 3'- -GGCACAG-------UGCCGcc--UUUGCGCUUGUu -5' |
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6951 | 5' | -53.1 | NC_001875.2 | + | 12957 | 0.69 | 0.86447 |
Target: 5'- aCGgucucGUCGCGGCGG--GCGUGGGCu- -3' miRNA: 3'- gGCa----CAGUGCCGCCuuUGCGCUUGuu -5' |
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6951 | 5' | -53.1 | NC_001875.2 | + | 13902 | 0.69 | 0.872072 |
Target: 5'- aCGgGUCACGGCGucuACuGCGAGCGGg -3' miRNA: 3'- gGCaCAGUGCCGCcuuUG-CGCUUGUU- -5' |
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6951 | 5' | -53.1 | NC_001875.2 | + | 59942 | 0.69 | 0.872072 |
Target: 5'- gCCGUGUCGCGGCuGGu--CGaCGAGu-- -3' miRNA: 3'- -GGCACAGUGCCG-CCuuuGC-GCUUguu -5' |
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6951 | 5' | -53.1 | NC_001875.2 | + | 65767 | 0.69 | 0.886594 |
Target: 5'- uUCGUG-CGCGGCGGGcggcGGCGCGucguCGu -3' miRNA: 3'- -GGCACaGUGCCGCCU----UUGCGCuu--GUu -5' |
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6951 | 5' | -53.1 | NC_001875.2 | + | 89787 | 0.69 | 0.893505 |
Target: 5'- cUCGUG-CACGuGCGcGAAcgcaGCGCGGGCGg -3' miRNA: 3'- -GGCACaGUGC-CGC-CUU----UGCGCUUGUu -5' |
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6951 | 5' | -53.1 | NC_001875.2 | + | 41125 | 0.69 | 0.893505 |
Target: 5'- gUCGUGUCGCgcuugaccGGCGGccGCGCcGGCAAc -3' miRNA: 3'- -GGCACAGUG--------CCGCCuuUGCGcUUGUU- -5' |
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6951 | 5' | -53.1 | NC_001875.2 | + | 38221 | 0.68 | 0.8982 |
Target: 5'- aCGUG-CACgucagguuugacgaGGCGGAAGCGCGcgucuACAAc -3' miRNA: 3'- gGCACaGUG--------------CCGCCUUUGCGCu----UGUU- -5' |
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6951 | 5' | -53.1 | NC_001875.2 | + | 67141 | 0.68 | 0.900176 |
Target: 5'- gCCGUGUUGCuGCGGcugucuGCGCGGgACAGc -3' miRNA: 3'- -GGCACAGUGcCGCCuu----UGCGCU-UGUU- -5' |
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6951 | 5' | -53.1 | NC_001875.2 | + | 82940 | 0.68 | 0.906603 |
Target: 5'- uCCGUcgucucggucGUCGCGGCGG--GCGCGuccucGGCGAc -3' miRNA: 3'- -GGCA----------CAGUGCCGCCuuUGCGC-----UUGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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