miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6951 5' -53.1 NC_001875.2 + 48 0.67 0.953272
Target:  5'- -gGUGcUCAacuCGGCGGcgGCGgCGAACGAc -3'
miRNA:   3'- ggCAC-AGU---GCCGCCuuUGC-GCUUGUU- -5'
6951 5' -53.1 NC_001875.2 + 12957 0.69 0.86447
Target:  5'- aCGgucucGUCGCGGCGG--GCGUGGGCu- -3'
miRNA:   3'- gGCa----CAGUGCCGCCuuUGCGCUUGuu -5'
6951 5' -53.1 NC_001875.2 + 13902 0.69 0.872072
Target:  5'- aCGgGUCACGGCGucuACuGCGAGCGGg -3'
miRNA:   3'- gGCaCAGUGCCGCcuuUG-CGCUUGUU- -5'
6951 5' -53.1 NC_001875.2 + 15305 0.71 0.79637
Target:  5'- ---aGUUACGGUGGccauuAACGCGAACAc -3'
miRNA:   3'- ggcaCAGUGCCGCCu----UUGCGCUUGUu -5'
6951 5' -53.1 NC_001875.2 + 19866 0.72 0.755382
Target:  5'- gCCGcGUCGCGGCGcgggcgccguuugcGAAACGCGuGCGc -3'
miRNA:   3'- -GGCaCAGUGCCGC--------------CUUUGCGCuUGUu -5'
6951 5' -53.1 NC_001875.2 + 28645 0.71 0.787066
Target:  5'- cCCGUGUCguggaACGuGUGGAAcggcgGCGUGGGCGAc -3'
miRNA:   3'- -GGCACAG-----UGC-CGCCUU-----UGCGCUUGUU- -5'
6951 5' -53.1 NC_001875.2 + 35399 0.66 0.967708
Target:  5'- uCCGUGgCGCGcGCGaGcGACGCcGACAAg -3'
miRNA:   3'- -GGCACaGUGC-CGC-CuUUGCGcUUGUU- -5'
6951 5' -53.1 NC_001875.2 + 37040 0.73 0.687612
Target:  5'- gCCGUG-CACGGCGcGugcacgcGCGCGGACGc -3'
miRNA:   3'- -GGCACaGUGCCGC-Cuu-----UGCGCUUGUu -5'
6951 5' -53.1 NC_001875.2 + 37965 0.66 0.967708
Target:  5'- -gGUGUucaCGCGGCGGccuGCGCGcuCAGc -3'
miRNA:   3'- ggCACA---GUGCCGCCuu-UGCGCuuGUU- -5'
6951 5' -53.1 NC_001875.2 + 38149 0.67 0.948642
Target:  5'- aCGUGUCcaaguccAUGcGCGuGAACGCGAGCGc -3'
miRNA:   3'- gGCACAG-------UGC-CGCcUUUGCGCUUGUu -5'
6951 5' -53.1 NC_001875.2 + 38221 0.68 0.8982
Target:  5'- aCGUG-CACgucagguuugacgaGGCGGAAGCGCGcgucuACAAc -3'
miRNA:   3'- gGCACaGUG--------------CCGCCUUUGCGCu----UGUU- -5'
6951 5' -53.1 NC_001875.2 + 39317 0.68 0.918718
Target:  5'- aCCGUG-C-CGGCGGcguGCGCGcgcuGCAGg -3'
miRNA:   3'- -GGCACaGuGCCGCCuu-UGCGCu---UGUU- -5'
6951 5' -53.1 NC_001875.2 + 41125 0.69 0.893505
Target:  5'- gUCGUGUCGCgcuugaccGGCGGccGCGCcGGCAAc -3'
miRNA:   3'- -GGCACAGUG--------CCGCCuuUGCGcUUGUU- -5'
6951 5' -53.1 NC_001875.2 + 42730 0.68 0.912784
Target:  5'- cCCGgucGUCGCGcGCGGcGACGCGcAugGu -3'
miRNA:   3'- -GGCa--CAGUGC-CGCCuUUGCGC-UugUu -5'
6951 5' -53.1 NC_001875.2 + 46509 0.66 0.967708
Target:  5'- gCGU-UCGCGGCGGGcggGGCGaGAGCGc -3'
miRNA:   3'- gGCAcAGUGCCGCCU---UUGCgCUUGUu -5'
6951 5' -53.1 NC_001875.2 + 49645 0.68 0.926605
Target:  5'- cCCGUGUacucgccguacugccCGCGGCGGuuGCGCa----- -3'
miRNA:   3'- -GGCACA---------------GUGCCGCCuuUGCGcuuguu -5'
6951 5' -53.1 NC_001875.2 + 59942 0.69 0.872072
Target:  5'- gCCGUGUCGCGGCuGGu--CGaCGAGu-- -3'
miRNA:   3'- -GGCACAGUGCCG-CCuuuGC-GCUUguu -5'
6951 5' -53.1 NC_001875.2 + 61912 1.08 0.005814
Target:  5'- gCCGUGUCACGGCGGAAACGCGAACAAu -3'
miRNA:   3'- -GGCACAGUGCCGCCUUUGCGCUUGUU- -5'
6951 5' -53.1 NC_001875.2 + 65144 0.66 0.970756
Target:  5'- -gGUGUCGgaGGCGGucACGUGcAGCAu -3'
miRNA:   3'- ggCACAGUg-CCGCCuuUGCGC-UUGUu -5'
6951 5' -53.1 NC_001875.2 + 65767 0.69 0.886594
Target:  5'- uUCGUG-CGCGGCGGGcggcGGCGCGucguCGu -3'
miRNA:   3'- -GGCACaGUGCCGCCU----UUGCGCuu--GUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.