miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6952 5' -52.7 NC_001875.2 + 80520 0.66 0.965563
Target:  5'- aUGGCGCGUgcgaGcUGGCCGACGcccacuacuauaAGAGg -3'
miRNA:   3'- aAUUGCGCAa---CcACCGGUUGC------------UCUCa -5'
6952 5' -52.7 NC_001875.2 + 22588 0.66 0.96207
Target:  5'- -cGGCGCGUUGGccGGCCGGCu----- -3'
miRNA:   3'- aaUUGCGCAACCa-CCGGUUGcucuca -5'
6952 5' -52.7 NC_001875.2 + 27224 0.66 0.958338
Target:  5'- -cGGCGCacac--GGCCGACGAGGGUa -3'
miRNA:   3'- aaUUGCGcaaccaCCGGUUGCUCUCA- -5'
6952 5' -52.7 NC_001875.2 + 87320 0.66 0.954362
Target:  5'- --uACGCcaUGGUGGCCGACaaauuugcAGAGUu -3'
miRNA:   3'- aauUGCGcaACCACCGGUUGc-------UCUCA- -5'
6952 5' -52.7 NC_001875.2 + 59093 0.66 0.954362
Target:  5'- --cGCGCGUUGGagcgcaccuugGGCCGcuACGAGGa- -3'
miRNA:   3'- aauUGCGCAACCa----------CCGGU--UGCUCUca -5'
6952 5' -52.7 NC_001875.2 + 128032 0.66 0.950137
Target:  5'- -cGACGaCGgccGGUGGUCGACGcuGAGUc -3'
miRNA:   3'- aaUUGC-GCaa-CCACCGGUUGCu-CUCA- -5'
6952 5' -52.7 NC_001875.2 + 115815 0.66 0.950137
Target:  5'- -aAACGUGUUGGUGG-CGACGuuGAc- -3'
miRNA:   3'- aaUUGCGCAACCACCgGUUGCu-CUca -5'
6952 5' -52.7 NC_001875.2 + 7145 0.66 0.945659
Target:  5'- -aGGCGCGUUGGccgaagGGCCAACa----- -3'
miRNA:   3'- aaUUGCGCAACCa-----CCGGUUGcucuca -5'
6952 5' -52.7 NC_001875.2 + 108910 0.67 0.940925
Target:  5'- -cAACGCGUUGGUGGaCGACa----- -3'
miRNA:   3'- aaUUGCGCAACCACCgGUUGcucuca -5'
6952 5' -52.7 NC_001875.2 + 46243 0.67 0.935931
Target:  5'- -aAGCGCGUUGGUGGa-GGCGcuAGa -3'
miRNA:   3'- aaUUGCGCAACCACCggUUGCucUCa -5'
6952 5' -52.7 NC_001875.2 + 11996 0.67 0.925163
Target:  5'- -gGGCGCGggugUGGUGGCgAGCGcGGc- -3'
miRNA:   3'- aaUUGCGCa---ACCACCGgUUGCuCUca -5'
6952 5' -52.7 NC_001875.2 + 78268 0.68 0.913349
Target:  5'- -cAACGCGUcaauuGUGGCCAACGAa--- -3'
miRNA:   3'- aaUUGCGCAac---CACCGGUUGCUcuca -5'
6952 5' -52.7 NC_001875.2 + 124269 0.68 0.900498
Target:  5'- -cGGCGCGUUGGUcGUCGACGAc--- -3'
miRNA:   3'- aaUUGCGCAACCAcCGGUUGCUcuca -5'
6952 5' -52.7 NC_001875.2 + 75681 0.68 0.900498
Target:  5'- -gAugGCGUUGGcgucgGcGUCGGCGAGGGc -3'
miRNA:   3'- aaUugCGCAACCa----C-CGGUUGCUCUCa -5'
6952 5' -52.7 NC_001875.2 + 40404 0.68 0.900498
Target:  5'- uUUGGCGCGgacGUGGUCAAcacCGAGGGg -3'
miRNA:   3'- -AAUUGCGCaacCACCGGUU---GCUCUCa -5'
6952 5' -52.7 NC_001875.2 + 26163 0.7 0.830664
Target:  5'- -gGGCGCGgugugugGGUGGCCGGCaaGGAGc -3'
miRNA:   3'- aaUUGCGCaa-----CCACCGGUUGc-UCUCa -5'
6952 5' -52.7 NC_001875.2 + 67230 0.7 0.803562
Target:  5'- -gGGCGCaaacgGGUGGCCcgacuGCGAGGGg -3'
miRNA:   3'- aaUUGCGcaa--CCACCGGu----UGCUCUCa -5'
6952 5' -52.7 NC_001875.2 + 12324 0.71 0.755132
Target:  5'- -cAACGCGccc--GGCCAGCGAGAGg -3'
miRNA:   3'- aaUUGCGCaaccaCCGGUUGCUCUCa -5'
6952 5' -52.7 NC_001875.2 + 58480 0.71 0.745048
Target:  5'- ---uUGCGcUGuGUGGCCAACGAGAc- -3'
miRNA:   3'- aauuGCGCaAC-CACCGGUUGCUCUca -5'
6952 5' -52.7 NC_001875.2 + 86330 0.72 0.734856
Target:  5'- uUUGGCGCGUUGGcuGCCGugGAGGc- -3'
miRNA:   3'- -AAUUGCGCAACCacCGGUugCUCUca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.