miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6961 3' -51.4 NC_001875.2 + 43320 0.66 0.974475
Target:  5'- -cGCGcgcGGGUcgGCGUggUUgccgCCGCGCa -3'
miRNA:   3'- aaUGCaa-CCCG--CGCGuuAAa---GGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 62688 0.66 0.977109
Target:  5'- cUugGUUGuGUGCGCAGaaugcucgCCACGUu -3'
miRNA:   3'- aAugCAACcCGCGCGUUaaa-----GGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 91156 0.66 0.97608
Target:  5'- -cGCGaUUGacGGuCGCGCAAUUggacggaaugucgCCGCGCa -3'
miRNA:   3'- aaUGC-AAC--CC-GCGCGUUAAa------------GGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 83012 0.66 0.977109
Target:  5'- -gGCGUcagcUGGaccGCGCGCAgcgaGUgcgCCACGUg -3'
miRNA:   3'- aaUGCA----ACC---CGCGCGU----UAaa-GGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 105961 0.66 0.979536
Target:  5'- -aGCGUcuccuUGGGCGCcGCAAUgggCAgGCu -3'
miRNA:   3'- aaUGCA-----ACCCGCG-CGUUAaagGUgCG- -5'
6961 3' -51.4 NC_001875.2 + 83614 0.66 0.979536
Target:  5'- --gUGUUcGGCGCGU----UCCGCGCc -3'
miRNA:   3'- aauGCAAcCCGCGCGuuaaAGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 95703 0.66 0.979536
Target:  5'- cUACGgcucGGGCGCGCugaa---ACGCg -3'
miRNA:   3'- aAUGCaa--CCCGCGCGuuaaaggUGCG- -5'
6961 3' -51.4 NC_001875.2 + 18544 0.66 0.981767
Target:  5'- gUACGUgcugcUGGGCGUGgGug-UCUugaGCGCg -3'
miRNA:   3'- aAUGCA-----ACCCGCGCgUuaaAGG---UGCG- -5'
6961 3' -51.4 NC_001875.2 + 33221 0.66 0.983615
Target:  5'- -cGCGggcgcGGGCucgccggGCGCcGUUUCgGCGCg -3'
miRNA:   3'- aaUGCaa---CCCG-------CGCGuUAAAGgUGCG- -5'
6961 3' -51.4 NC_001875.2 + 99307 0.67 0.96661
Target:  5'- -gGCGUUguauacGGGCuGCGCAgcaacGUUgcgcgaagcgucgugUCCGCGCa -3'
miRNA:   3'- aaUGCAA------CCCG-CGCGU-----UAA---------------AGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 51948 0.67 0.96173
Target:  5'- cUACuUUGGGCGCGaCGugccgCACGCg -3'
miRNA:   3'- aAUGcAACCCGCGC-GUuaaagGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 5925 0.67 0.960994
Target:  5'- -gGCGUUGGGUagcgccGCGCAGgugggcgcggCCuCGCa -3'
miRNA:   3'- aaUGCAACCCG------CGCGUUaaa-------GGuGCG- -5'
6961 3' -51.4 NC_001875.2 + 38777 0.67 0.96856
Target:  5'- --cUGUUGGGCGgagagcgcgccCGCAA-UUCgGCGCu -3'
miRNA:   3'- aauGCAACCCGC-----------GCGUUaAAGgUGCG- -5'
6961 3' -51.4 NC_001875.2 + 63689 0.67 0.965263
Target:  5'- -aAUGagGGGCGCGCAcgaggUgCGCGUg -3'
miRNA:   3'- aaUGCaaCCCGCGCGUuaa--AgGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 37051 0.67 0.96856
Target:  5'- -cGCGUgcacGCGCGCGGacgcggCCACGCu -3'
miRNA:   3'- aaUGCAacc-CGCGCGUUaaa---GGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 103224 0.67 0.965263
Target:  5'- ---aGUUGGGCaCGUAAgccCCGCGUa -3'
miRNA:   3'- aaugCAACCCGcGCGUUaaaGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 11033 0.67 0.971628
Target:  5'- -cAUGaUGGGCGaC-CAGUUUcaCCACGCg -3'
miRNA:   3'- aaUGCaACCCGC-GcGUUAAA--GGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 86169 0.67 0.965263
Target:  5'- -gACGU--GGUGCGgGAUUUUgACGCg -3'
miRNA:   3'- aaUGCAacCCGCGCgUUAAAGgUGCG- -5'
6961 3' -51.4 NC_001875.2 + 9598 0.67 0.957955
Target:  5'- -aGCGgUGGGCGCGUgcaa-CgACGCg -3'
miRNA:   3'- aaUGCaACCCGCGCGuuaaaGgUGCG- -5'
6961 3' -51.4 NC_001875.2 + 21069 0.67 0.965263
Target:  5'- -gGCGUuuUGGGCaaaagacgcgcgGCgGCGGUcgCCGCGCu -3'
miRNA:   3'- aaUGCA--ACCCG------------CG-CGUUAaaGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.