miRNA display CGI


Results 1 - 20 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6961 3' -51.4 NC_001875.2 + 79087 0.65 0.984951
Target:  5'- -cGCGUUGGcguaGUGCGCAuaaaacuuggCCACGg -3'
miRNA:   3'- aaUGCAACC----CGCGCGUuaaa------GGUGCg -5'
6961 3' -51.4 NC_001875.2 + 66113 0.66 0.979536
Target:  5'- -cGCGgcGGGCG-GCGAgg-CgGCGCc -3'
miRNA:   3'- aaUGCaaCCCGCgCGUUaaaGgUGCG- -5'
6961 3' -51.4 NC_001875.2 + 62106 0.66 0.983811
Target:  5'- -cACGcagGGGCGCGUGg---CCACGa -3'
miRNA:   3'- aaUGCaa-CCCGCGCGUuaaaGGUGCg -5'
6961 3' -51.4 NC_001875.2 + 33221 0.66 0.983615
Target:  5'- -cGCGggcgcGGGCucgccggGCGCcGUUUCgGCGCg -3'
miRNA:   3'- aaUGCaa---CCCG-------CGCGuUAAAGgUGCG- -5'
6961 3' -51.4 NC_001875.2 + 83614 0.66 0.979536
Target:  5'- --gUGUUcGGCGCGU----UCCGCGCc -3'
miRNA:   3'- aauGCAAcCCGCGCGuuaaAGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 20921 0.66 0.974475
Target:  5'- --uCGUgUGGGCGCGCcAUggCCA-GCu -3'
miRNA:   3'- aauGCA-ACCCGCGCGuUAaaGGUgCG- -5'
6961 3' -51.4 NC_001875.2 + 44462 0.66 0.9742
Target:  5'- -cACGUUGucguuGGCGCGCugcgggucuugAGUUUCCgacauugggcuuuGCGCg -3'
miRNA:   3'- aaUGCAAC-----CCGCGCG-----------UUAAAGG-------------UGCG- -5'
6961 3' -51.4 NC_001875.2 + 62772 0.66 0.979536
Target:  5'- -cGCGcagGGGUGCGU---UUgCACGCa -3'
miRNA:   3'- aaUGCaa-CCCGCGCGuuaAAgGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 46449 0.66 0.976855
Target:  5'- gUUACGgu-GGCGCGCAaaucgcaaacggcGUUUgCCAaCGCg -3'
miRNA:   3'- -AAUGCaacCCGCGCGU-------------UAAA-GGU-GCG- -5'
6961 3' -51.4 NC_001875.2 + 85375 0.66 0.983811
Target:  5'- -cGCGUUGGcaaaCGCcguuuGCGAUUUgCGCGCc -3'
miRNA:   3'- aaUGCAACCc---GCG-----CGUUAAAgGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 18544 0.66 0.981767
Target:  5'- gUACGUgcugcUGGGCGUGgGug-UCUugaGCGCg -3'
miRNA:   3'- aAUGCA-----ACCCGCGCgUuaaAGG---UGCG- -5'
6961 3' -51.4 NC_001875.2 + 105961 0.66 0.979536
Target:  5'- -aGCGUcuccuUGGGCGCcGCAAUgggCAgGCu -3'
miRNA:   3'- aaUGCA-----ACCCGCG-CGUUAaagGUgCG- -5'
6961 3' -51.4 NC_001875.2 + 91156 0.66 0.97608
Target:  5'- -cGCGaUUGacGGuCGCGCAAUUggacggaaugucgCCGCGCa -3'
miRNA:   3'- aaUGC-AAC--CC-GCGCGUUAAa------------GGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 40604 0.66 0.974475
Target:  5'- cUACGgcgccguggUGGGCGC-CA----CCACGCg -3'
miRNA:   3'- aAUGCa--------ACCCGCGcGUuaaaGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 71896 0.66 0.973923
Target:  5'- -gGCGUucuuguccgcccacUGGGCGUGCGcgUcggcgagcgccuugaCCGCGCg -3'
miRNA:   3'- aaUGCA--------------ACCCGCGCGUuaAa--------------GGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 83012 0.66 0.977109
Target:  5'- -gGCGUcagcUGGaccGCGCGCAgcgaGUgcgCCACGUg -3'
miRNA:   3'- aaUGCA----ACC---CGCGCGU----UAaa-GGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 62395 0.66 0.983811
Target:  5'- -aGCGUggccGGCGCGCAAacgCCgGCGUc -3'
miRNA:   3'- aaUGCAac--CCGCGCGUUaaaGG-UGCG- -5'
6961 3' -51.4 NC_001875.2 + 43320 0.66 0.974475
Target:  5'- -cGCGcgcGGGUcgGCGUggUUgccgCCGCGCa -3'
miRNA:   3'- aaUGCaa-CCCG--CGCGuuAAa---GGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 62688 0.66 0.977109
Target:  5'- cUugGUUGuGUGCGCAGaaugcucgCCACGUu -3'
miRNA:   3'- aAugCAACcCGCGCGUUaaa-----GGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 95703 0.66 0.979536
Target:  5'- cUACGgcucGGGCGCGCugaa---ACGCg -3'
miRNA:   3'- aAUGCaa--CCCGCGCGuuaaaggUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.