miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6961 3' -51.4 NC_001875.2 + 113388 0.7 0.885433
Target:  5'- ------aGcGGCGCGCGAUUcgcgcgCCACGCg -3'
miRNA:   3'- aaugcaaC-CCGCGCGUUAAa-----GGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 37102 0.72 0.792058
Target:  5'- -cGCG-UGGGUGUGCGGgcgcggcgCCGCGCc -3'
miRNA:   3'- aaUGCaACCCGCGCGUUaaa-----GGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 50009 0.72 0.792058
Target:  5'- -cGCGguugGGGCGCGCGuggucgCCGgGCg -3'
miRNA:   3'- aaUGCaa--CCCGCGCGUuaaa--GGUgCG- -5'
6961 3' -51.4 NC_001875.2 + 66034 0.72 0.810831
Target:  5'- -aGCGcUUGGcGcCGCGCAGgcaCCGCGCg -3'
miRNA:   3'- aaUGC-AACC-C-GCGCGUUaaaGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 30656 0.71 0.819954
Target:  5'- ---aGUUGGGCGCcggcacGUAAUUgaccagcgCCACGCg -3'
miRNA:   3'- aaugCAACCCGCG------CGUUAAa-------GGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 32786 0.71 0.837624
Target:  5'- -cGCGgcgUGGGCGgGCg----CCGCGCc -3'
miRNA:   3'- aaUGCa--ACCCGCgCGuuaaaGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 11990 0.71 0.854468
Target:  5'- -gGCGUUGGGCGCGgGugugGUggCgaGCGCg -3'
miRNA:   3'- aaUGCAACCCGCGCgU----UAaaGg-UGCG- -5'
6961 3' -51.4 NC_001875.2 + 12967 0.71 0.86256
Target:  5'- -cGCGgcGGGCGUGgGc--UCCGCGCc -3'
miRNA:   3'- aaUGCaaCCCGCGCgUuaaAGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 90456 0.7 0.884705
Target:  5'- -gGCGUcggUGGGCggcGCGUAAUUUCgcugcagCGCGCg -3'
miRNA:   3'- aaUGCA---ACCCG---CGCGUUAAAG-------GUGCG- -5'
6961 3' -51.4 NC_001875.2 + 110734 0.72 0.772648
Target:  5'- -aACGcgGGGCGCguGCAGUUUaaGCGCg -3'
miRNA:   3'- aaUGCaaCCCGCG--CGUUAAAggUGCG- -5'
6961 3' -51.4 NC_001875.2 + 76101 0.73 0.74252
Target:  5'- -aACGUuaUGGGCGCGCcGUagcgcuccuuUUCCAgCGCc -3'
miRNA:   3'- aaUGCA--ACCCGCGCGuUA----------AAGGU-GCG- -5'
6961 3' -51.4 NC_001875.2 + 39930 0.73 0.721882
Target:  5'- -aGCGgccuGCGCGCAAUUUgCGCGCg -3'
miRNA:   3'- aaUGCaaccCGCGCGUUAAAgGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 91455 0.85 0.21459
Target:  5'- -gGCGcgUGGGCGCGCAuguccaccgAUUUCCugGCg -3'
miRNA:   3'- aaUGCa-ACCCGCGCGU---------UAAAGGugCG- -5'
6961 3' -51.4 NC_001875.2 + 1053 0.77 0.519023
Target:  5'- -aGCGUUGGGCGCaacguugGCGA---CCGCGCg -3'
miRNA:   3'- aaUGCAACCCGCG-------CGUUaaaGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 80616 0.76 0.583102
Target:  5'- -cACGgUGGGCGCGCGGaa--CGCGCg -3'
miRNA:   3'- aaUGCaACCCGCGCGUUaaagGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 93674 0.76 0.59379
Target:  5'- cUGCGUcGGGCGCuCGcgUUCaCGCGCa -3'
miRNA:   3'- aAUGCAaCCCGCGcGUuaAAG-GUGCG- -5'
6961 3' -51.4 NC_001875.2 + 26892 0.76 0.604508
Target:  5'- aUAUGUUGGGCguuacGCGCGcgUUCUgcugGCGCa -3'
miRNA:   3'- aAUGCAACCCG-----CGCGUuaAAGG----UGCG- -5'
6961 3' -51.4 NC_001875.2 + 23818 0.75 0.647522
Target:  5'- -gGCGUcGGGCGCGCcGUgUCuCugGCg -3'
miRNA:   3'- aaUGCAaCCCGCGCGuUAaAG-GugCG- -5'
6961 3' -51.4 NC_001875.2 + 13364 0.75 0.658265
Target:  5'- --cCGUUGaagcuGGUGCGCAccGUUUCUACGCa -3'
miRNA:   3'- aauGCAAC-----CCGCGCGU--UAAAGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 42698 0.74 0.679671
Target:  5'- -cGCGc--GGCGCGCGGUUUCgUACGCa -3'
miRNA:   3'- aaUGCaacCCGCGCGUUAAAG-GUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.