miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6961 3' -51.4 NC_001875.2 + 368 0.69 0.918554
Target:  5'- -cACGUUGGcCGCGCGAUUgugcucggCCAgCGUu -3'
miRNA:   3'- aaUGCAACCcGCGCGUUAAa-------GGU-GCG- -5'
6961 3' -51.4 NC_001875.2 + 1053 0.77 0.519023
Target:  5'- -aGCGUUGGGCGCaacguugGCGA---CCGCGCg -3'
miRNA:   3'- aaUGCAACCCGCG-------CGUUaaaGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 2284 0.68 0.94034
Target:  5'- -gACGUcgugaUGcGCGCGCGccGUggCCGCGCg -3'
miRNA:   3'- aaUGCA-----ACcCGCGCGU--UAaaGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 3043 0.69 0.912448
Target:  5'- --cCGUUGGGCaGCGCGuaagaggCGCGCa -3'
miRNA:   3'- aauGCAACCCG-CGCGUuaaag--GUGCG- -5'
6961 3' -51.4 NC_001875.2 + 5925 0.67 0.960994
Target:  5'- -gGCGUUGGGUagcgccGCGCAGgugggcgcggCCuCGCa -3'
miRNA:   3'- aaUGCAACCCG------CGCGUUaaa-------GGuGCG- -5'
6961 3' -51.4 NC_001875.2 + 9033 0.71 0.819954
Target:  5'- cUUGCGUUuggagccgccGGcCGCGcCGGUUUCCGCGCc -3'
miRNA:   3'- -AAUGCAA----------CCcGCGC-GUUAAAGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 9521 0.7 0.878049
Target:  5'- -----aUGGGCGCGgAAg--CCGCGCc -3'
miRNA:   3'- aaugcaACCCGCGCgUUaaaGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 9598 0.67 0.957955
Target:  5'- -aGCGgUGGGCGCGUgcaa-CgACGCg -3'
miRNA:   3'- aaUGCaACCCGCGCGuuaaaGgUGCG- -5'
6961 3' -51.4 NC_001875.2 + 9692 0.66 0.983811
Target:  5'- --cCGUUGGGgcucgccgucgUGCGCGccggCCGCGCc -3'
miRNA:   3'- aauGCAACCC-----------GCGCGUuaaaGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 11033 0.67 0.971628
Target:  5'- -cAUGaUGGGCGaC-CAGUUUcaCCACGCg -3'
miRNA:   3'- aaUGCaACCCGC-GcGUUAAA--GGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 11990 0.71 0.854468
Target:  5'- -gGCGUUGGGCGCGgGugugGUggCgaGCGCg -3'
miRNA:   3'- aaUGCAACCCGCGCgU----UAaaGg-UGCG- -5'
6961 3' -51.4 NC_001875.2 + 12189 0.69 0.918554
Target:  5'- aUGCGcagcUUGGGCGCGUAAaa--CGCGUu -3'
miRNA:   3'- aAUGC----AACCCGCGCGUUaaagGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 12401 0.67 0.957955
Target:  5'- --uCGUcGGGC-CGCuGUUUgCCGCGCg -3'
miRNA:   3'- aauGCAaCCCGcGCGuUAAA-GGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 12967 0.71 0.86256
Target:  5'- -cGCGgcGGGCGUGgGc--UCCGCGCc -3'
miRNA:   3'- aaUGCaaCCCGCGCgUuaaAGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 13364 0.75 0.658265
Target:  5'- --cCGUUGaagcuGGUGCGCAccGUUUCUACGCa -3'
miRNA:   3'- aauGCAAC-----CCGCGCGU--UAAAGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 18451 0.69 0.929975
Target:  5'- -cGCGU--GGCGCGCGAa--UCGCGCg -3'
miRNA:   3'- aaUGCAacCCGCGCGUUaaaGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 18544 0.66 0.981767
Target:  5'- gUACGUgcugcUGGGCGUGgGug-UCUugaGCGCg -3'
miRNA:   3'- aAUGCA-----ACCCGCGCgUuaaAGG---UGCG- -5'
6961 3' -51.4 NC_001875.2 + 20096 0.72 0.80153
Target:  5'- -cACGUgaUGGGCGCcccaauucGCAGgugUUCGCGCa -3'
miRNA:   3'- aaUGCA--ACCCGCG--------CGUUaa-AGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 20921 0.66 0.974475
Target:  5'- --uCGUgUGGGCGCGCcAUggCCA-GCu -3'
miRNA:   3'- aauGCA-ACCCGCGCGuUAaaGGUgCG- -5'
6961 3' -51.4 NC_001875.2 + 21069 0.67 0.965263
Target:  5'- -gGCGUuuUGGGCaaaagacgcgcgGCgGCGGUcgCCGCGCu -3'
miRNA:   3'- aaUGCA--ACCCG------------CG-CGUUAaaGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.